Appendix A: Available Fields
The GDC API's search and retrieval endpoints provide access to fields that correspond to properties defined in the GDC Data Dictionary. This appendix contains a list of fields available at each endpoint, and a list of field groups accessible via the expand parameter.
Field Listing by Endpoint
Project Fields
| Field Name |
|---|
| dbgap_accession_number |
| disease_type |
| name |
| primary_site |
| project_id |
| released |
| state |
| program.dbgap_accession_number |
| program.name |
| program.program_id |
| summary.case_count |
| summary.file_count |
| summary.file_size |
| summary.data_categories.case_count |
| summary.data_categories.data_category |
| summary.data_categories.file_count |
| summary.experimental_strategies.case_count |
| summary.experimental_strategies.experimental_strategy |
| summary.experimental_strategies.file_count |
Case Fields
| Field Name |
|---|
| aliquot_ids |
| analyte_ids |
| case_id |
| consent_type |
| created_datetime |
| days_to_consent |
| days_to_lost_to_followup |
| diagnosis_ids |
| disease_type |
| index_date |
| lost_to_followup |
| portion_ids |
| primary_site |
| sample_ids |
| slide_ids |
| state |
| submitter_aliquot_ids |
| submitter_analyte_ids |
| submitter_diagnosis_ids |
| submitter_id |
| submitter_portion_ids |
| submitter_sample_ids |
| submitter_slide_ids |
| updated_datetime |
| annotations.annotation_id |
| annotations.case_id |
| annotations.case_submitter_id |
| annotations.category |
| annotations.classification |
| annotations.created_datetime |
| annotations.creator |
| annotations.entity_id |
| annotations.entity_submitter_id |
| annotations.entity_type |
| annotations.legacy_created_datetime |
| annotations.legacy_updated_datetime |
| annotations.notes |
| annotations.state |
| annotations.status |
| annotations.submitter_id |
| annotations.updated_datetime |
| demographic.age_at_index |
| demographic.age_is_obfuscated |
| demographic.cause_of_death |
| demographic.cause_of_death_source |
| demographic.country_of_birth |
| demographic.country_of_residence_at_enrollment |
| demographic.created_datetime |
| demographic.days_to_birth |
| demographic.days_to_death |
| demographic.demographic_id |
| demographic.education_level |
| demographic.ethnicity |
| demographic.marital_status |
| demographic.occupation_duration_years |
| demographic.population_group |
| demographic.race |
| demographic.sex_at_birth |
| demographic.state |
| demographic.submitter_id |
| demographic.updated_datetime |
| demographic.vital_status |
| demographic.year_of_birth |
| demographic.year_of_death |
| diagnoses.adrenal_hormone |
| diagnoses.age_at_diagnosis |
| diagnoses.ajcc_clinical_m |
| diagnoses.ajcc_clinical_n |
| diagnoses.ajcc_clinical_stage |
| diagnoses.ajcc_clinical_t |
| diagnoses.ajcc_pathologic_m |
| diagnoses.ajcc_pathologic_n |
| diagnoses.ajcc_pathologic_stage |
| diagnoses.ajcc_pathologic_t |
| diagnoses.ajcc_serum_tumor_markers |
| diagnoses.ajcc_staging_system_edition |
| diagnoses.ann_arbor_b_symptoms |
| diagnoses.ann_arbor_b_symptoms_described |
| diagnoses.ann_arbor_clinical_stage |
| diagnoses.ann_arbor_extranodal_involvement |
| diagnoses.ann_arbor_pathologic_stage |
| diagnoses.best_overall_response |
| diagnoses.burkitt_lymphoma_clinical_variant |
| diagnoses.calgb_risk_group |
| diagnoses.cancer_detection_method |
| diagnoses.child_pugh_classification |
| diagnoses.clark_level |
| diagnoses.classification_of_tumor |
| diagnoses.cog_liver_stage |
| diagnoses.cog_neuroblastoma_risk_group |
| diagnoses.cog_renal_stage |
| diagnoses.cog_rhabdomyosarcoma_risk_group |
| diagnoses.contiguous_organ_invaded |
| diagnoses.created_datetime |
| diagnoses.days_to_best_overall_response |
| diagnoses.days_to_diagnosis |
| diagnoses.days_to_last_follow_up |
| diagnoses.days_to_last_known_disease_status |
| diagnoses.days_to_recurrence |
| diagnoses.diagnosis_id |
| diagnoses.diagnosis_is_primary_disease |
| diagnoses.double_expressor_lymphoma |
| diagnoses.double_hit_lymphoma |
| diagnoses.eln_risk_classification |
| diagnoses.enneking_msts_grade |
| diagnoses.enneking_msts_metastasis |
| diagnoses.enneking_msts_stage |
| diagnoses.enneking_msts_tumor_site |
| diagnoses.ensat_clinical_m |
| diagnoses.ensat_pathologic_n |
| diagnoses.ensat_pathologic_stage |
| diagnoses.ensat_pathologic_t |
| diagnoses.esophageal_columnar_dysplasia_degree |
| diagnoses.esophageal_columnar_metaplasia_present |
| diagnoses.fab_morphology_code |
| diagnoses.figo_stage |
| diagnoses.figo_staging_edition_year |
| diagnoses.first_symptom_longest_duration |
| diagnoses.first_symptom_prior_to_diagnosis |
| diagnoses.gastric_esophageal_junction_involvement |
| diagnoses.gleason_grade_group |
| diagnoses.gleason_grade_tertiary |
| diagnoses.gleason_patterns_percent |
| diagnoses.gleason_score |
| diagnoses.goblet_cells_columnar_mucosa_present |
| diagnoses.icd_10_code |
| diagnoses.igcccg_stage |
| diagnoses.inpc_grade |
| diagnoses.inpc_histologic_group |
| diagnoses.inrg_stage |
| diagnoses.inss_stage |
| diagnoses.international_prognostic_index |
| diagnoses.irs_group |
| diagnoses.irs_stage |
| diagnoses.ishak_fibrosis_score |
| diagnoses.iss_stage |
| diagnoses.last_known_disease_status |
| diagnoses.laterality |
| diagnoses.margin_distance |
| diagnoses.margins_involved_site |
| diagnoses.masaoka_stage |
| diagnoses.max_tumor_bulk_site |
| diagnoses.medulloblastoma_molecular_classification |
| diagnoses.melanoma_known_primary |
| diagnoses.metastasis_at_diagnosis |
| diagnoses.method_of_diagnosis |
| diagnoses.mitosis_karyorrhexis_index |
| diagnoses.morphology |
| diagnoses.ovarian_specimen_status |
| diagnoses.ovarian_surface_involvement |
| diagnoses.pediatric_kidney_staging |
| diagnoses.peritoneal_fluid_cytological_status |
| diagnoses.primary_diagnosis |
| diagnoses.primary_gleason_grade |
| diagnoses.prior_malignancy |
| diagnoses.prior_treatment |
| diagnoses.progression_or_recurrence |
| diagnoses.residual_disease |
| diagnoses.satellite_nodule_present |
| diagnoses.secondary_gleason_grade |
| diagnoses.site_of_resection_or_biopsy |
| diagnoses.sites_of_involvement |
| diagnoses.sites_of_involvement_count |
| diagnoses.state |
| diagnoses.submitter_id |
| diagnoses.supratentorial_localization |
| diagnoses.synchronous_malignancy |
| diagnoses.tissue_or_organ_of_origin |
| diagnoses.tumor_burden |
| diagnoses.tumor_confined_to_organ_of_origin |
| diagnoses.tumor_depth |
| diagnoses.tumor_focality |
| diagnoses.tumor_grade |
| diagnoses.tumor_grade_category |
| diagnoses.tumor_of_origin |
| diagnoses.tumor_regression_grade |
| diagnoses.uicc_clinical_m |
| diagnoses.uicc_clinical_n |
| diagnoses.uicc_clinical_stage |
| diagnoses.uicc_clinical_t |
| diagnoses.uicc_pathologic_m |
| diagnoses.uicc_pathologic_n |
| diagnoses.uicc_pathologic_stage |
| diagnoses.uicc_pathologic_t |
| diagnoses.uicc_staging_system_edition |
| diagnoses.ulceration_indicator |
| diagnoses.updated_datetime |
| diagnoses.weiss_assessment_findings |
| diagnoses.weiss_assessment_score |
| diagnoses.who_cns_grade |
| diagnoses.who_nte_grade |
| diagnoses.wilms_tumor_histologic_subtype |
| diagnoses.year_of_diagnosis |
| diagnoses.annotations.annotation_id |
| diagnoses.annotations.case_id |
| diagnoses.annotations.case_submitter_id |
| diagnoses.annotations.category |
| diagnoses.annotations.classification |
| diagnoses.annotations.created_datetime |
| diagnoses.annotations.creator |
| diagnoses.annotations.entity_id |
| diagnoses.annotations.entity_submitter_id |
| diagnoses.annotations.entity_type |
| diagnoses.annotations.legacy_created_datetime |
| diagnoses.annotations.legacy_updated_datetime |
| diagnoses.annotations.notes |
| diagnoses.annotations.state |
| diagnoses.annotations.status |
| diagnoses.annotations.submitter_id |
| diagnoses.annotations.updated_datetime |
| diagnoses.pathology_details.additional_pathology_findings |
| diagnoses.pathology_details.anaplasia_present |
| diagnoses.pathology_details.anaplasia_present_type |
| diagnoses.pathology_details.bone_marrow_malignant_cells |
| diagnoses.pathology_details.breslow_thickness |
| diagnoses.pathology_details.breslow_thickness_category |
| diagnoses.pathology_details.circumferential_resection_margin |
| diagnoses.pathology_details.columnar_mucosa_present |
| diagnoses.pathology_details.consistent_pathology_review |
| diagnoses.pathology_details.created_datetime |
| diagnoses.pathology_details.days_to_pathology_detail |
| diagnoses.pathology_details.dysplasia_degree |
| diagnoses.pathology_details.dysplasia_type |
| diagnoses.pathology_details.epithelioid_cell_percent |
| diagnoses.pathology_details.epithelioid_cell_percent_range |
| diagnoses.pathology_details.extracapsular_extension |
| diagnoses.pathology_details.extracapsular_extension_present |
| diagnoses.pathology_details.extranodal_extension |
| diagnoses.pathology_details.extraocular_nodule_size |
| diagnoses.pathology_details.extrascleral_extension |
| diagnoses.pathology_details.extrascleral_extension_present |
| diagnoses.pathology_details.extrathyroid_extension |
| diagnoses.pathology_details.greatest_tumor_dimension |
| diagnoses.pathology_details.gross_tumor_weight |
| diagnoses.pathology_details.histologic_progression_type |
| diagnoses.pathology_details.intratubular_germ_cell_neoplasia_present |
| diagnoses.pathology_details.largest_extrapelvic_peritoneal_focus |
| diagnoses.pathology_details.lymph_node_dissection_method |
| diagnoses.pathology_details.lymph_node_dissection_site |
| diagnoses.pathology_details.lymph_node_involved_site |
| diagnoses.pathology_details.lymph_node_involvement |
| diagnoses.pathology_details.lymph_nodes_positive |
| diagnoses.pathology_details.lymph_nodes_removed |
| diagnoses.pathology_details.lymph_nodes_tested |
| diagnoses.pathology_details.lymphatic_invasion_present |
| diagnoses.pathology_details.margin_status |
| diagnoses.pathology_details.measurement_type |
| diagnoses.pathology_details.measurement_unit |
| diagnoses.pathology_details.metaplasia_present |
| diagnoses.pathology_details.micrometastasis_present |
| diagnoses.pathology_details.morphologic_architectural_pattern |
| diagnoses.pathology_details.necrosis_percent |
| diagnoses.pathology_details.necrosis_present |
| diagnoses.pathology_details.non_nodal_regional_disease |
| diagnoses.pathology_details.non_nodal_tumor_deposits |
| diagnoses.pathology_details.number_proliferating_cells |
| diagnoses.pathology_details.pathology_detail_id |
| diagnoses.pathology_details.percent_tumor_invasion |
| diagnoses.pathology_details.percent_tumor_nuclei |
| diagnoses.pathology_details.perineural_invasion_present |
| diagnoses.pathology_details.peripancreatic_lymph_nodes_positive |
| diagnoses.pathology_details.peripancreatic_lymph_nodes_tested |
| diagnoses.pathology_details.prcc_type |
| diagnoses.pathology_details.prostatic_chips_positive_count |
| diagnoses.pathology_details.prostatic_chips_total_count |
| diagnoses.pathology_details.prostatic_involvement_percent |
| diagnoses.pathology_details.residual_tumor |
| diagnoses.pathology_details.residual_tumor_measurement |
| diagnoses.pathology_details.rhabdoid_percent |
| diagnoses.pathology_details.rhabdoid_present |
| diagnoses.pathology_details.sarcomatoid_percent |
| diagnoses.pathology_details.sarcomatoid_present |
| diagnoses.pathology_details.size_extraocular_nodule |
| diagnoses.pathology_details.spindle_cell_percent |
| diagnoses.pathology_details.spindle_cell_percent_range |
| diagnoses.pathology_details.state |
| diagnoses.pathology_details.submitter_id |
| diagnoses.pathology_details.timepoint_category |
| diagnoses.pathology_details.transglottic_extension |
| diagnoses.pathology_details.tumor_basal_diameter |
| diagnoses.pathology_details.tumor_burden |
| diagnoses.pathology_details.tumor_depth_descriptor |
| diagnoses.pathology_details.tumor_depth_measurement |
| diagnoses.pathology_details.tumor_infiltrating_lymphocytes |
| diagnoses.pathology_details.tumor_infiltrating_macrophages |
| diagnoses.pathology_details.tumor_largest_dimension_diameter |
| diagnoses.pathology_details.tumor_length_measurement |
| diagnoses.pathology_details.tumor_level_prostate |
| diagnoses.pathology_details.tumor_shape |
| diagnoses.pathology_details.tumor_thickness |
| diagnoses.pathology_details.tumor_width_measurement |
| diagnoses.pathology_details.updated_datetime |
| diagnoses.pathology_details.vascular_invasion_present |
| diagnoses.pathology_details.vascular_invasion_type |
| diagnoses.pathology_details.zone_of_origin_prostate |
| diagnoses.treatments.chemo_concurrent_to_radiation |
| diagnoses.treatments.clinical_trial_indicator |
| diagnoses.treatments.course_number |
| diagnoses.treatments.created_datetime |
| diagnoses.treatments.days_to_treatment_end |
| diagnoses.treatments.days_to_treatment_start |
| diagnoses.treatments.drug_category |
| diagnoses.treatments.embolic_agent |
| diagnoses.treatments.initial_disease_status |
| diagnoses.treatments.lesions_treated_number |
| diagnoses.treatments.margin_distance |
| diagnoses.treatments.margin_status |
| diagnoses.treatments.margins_involved_site |
| diagnoses.treatments.number_of_cycles |
| diagnoses.treatments.number_of_fractions |
| diagnoses.treatments.prescribed_dose |
| diagnoses.treatments.prescribed_dose_units |
| diagnoses.treatments.pretreatment |
| diagnoses.treatments.protocol_identifier |
| diagnoses.treatments.radiosensitizing_agent |
| diagnoses.treatments.reason_treatment_ended |
| diagnoses.treatments.reason_treatment_not_given |
| diagnoses.treatments.regimen_or_line_of_therapy |
| diagnoses.treatments.residual_disease |
| diagnoses.treatments.route_of_administration |
| diagnoses.treatments.state |
| diagnoses.treatments.submitter_id |
| diagnoses.treatments.therapeutic_agents |
| diagnoses.treatments.therapeutic_level_achieved |
| diagnoses.treatments.therapeutic_levels_achieved |
| diagnoses.treatments.therapeutic_target_level |
| diagnoses.treatments.timepoint_category |
| diagnoses.treatments.treatment_anatomic_sites |
| diagnoses.treatments.treatment_dose |
| diagnoses.treatments.treatment_dose_max |
| diagnoses.treatments.treatment_dose_units |
| diagnoses.treatments.treatment_duration |
| diagnoses.treatments.treatment_effect |
| diagnoses.treatments.treatment_effect_indicator |
| diagnoses.treatments.treatment_frequency |
| diagnoses.treatments.treatment_id |
| diagnoses.treatments.treatment_intent_type |
| diagnoses.treatments.treatment_or_therapy |
| diagnoses.treatments.treatment_outcome |
| diagnoses.treatments.treatment_outcome_duration |
| diagnoses.treatments.treatment_type |
| diagnoses.treatments.updated_datetime |
| exposures.age_at_last_exposure |
| exposures.age_at_onset |
| exposures.alcohol_days_per_week |
| exposures.alcohol_drinks_per_day |
| exposures.alcohol_frequency |
| exposures.alcohol_history |
| exposures.alcohol_intensity |
| exposures.alcohol_type |
| exposures.asbestos_exposure_type |
| exposures.chemical_exposure_type |
| exposures.cigarettes_per_day |
| exposures.created_datetime |
| exposures.environmental_tobacco_smoke_exposure |
| exposures.exposure_duration |
| exposures.exposure_duration_hrs_per_day |
| exposures.exposure_duration_years |
| exposures.exposure_id |
| exposures.exposure_source |
| exposures.exposure_type |
| exposures.occupation_duration_years |
| exposures.occupation_type |
| exposures.pack_years_smoked |
| exposures.parent_with_radiation_exposure |
| exposures.secondhand_smoke_as_child |
| exposures.smoking_frequency |
| exposures.state |
| exposures.submitter_id |
| exposures.time_between_waking_and_first_smoke |
| exposures.tobacco_smoking_onset_year |
| exposures.tobacco_smoking_quit_year |
| exposures.tobacco_smoking_status |
| exposures.type_of_smoke_exposure |
| exposures.type_of_tobacco_used |
| exposures.updated_datetime |
| exposures.use_per_day |
| family_histories.created_datetime |
| family_histories.family_history_id |
| family_histories.relationship_age_at_diagnosis |
| family_histories.relationship_primary_diagnosis |
| family_histories.relationship_sex_at_birth |
| family_histories.relationship_type |
| family_histories.relative_deceased |
| family_histories.relative_smoker |
| family_histories.relative_with_cancer_history |
| family_histories.relatives_with_cancer_history_count |
| family_histories.state |
| family_histories.submitter_id |
| family_histories.updated_datetime |
| files.access |
| files.acl |
| files.average_base_quality |
| files.average_insert_size |
| files.average_read_length |
| files.cancer_dna_fraction |
| files.channel |
| files.chip_id |
| files.chip_position |
| files.contamination |
| files.contamination_error |
| files.created_datetime |
| files.data_category |
| files.data_format |
| files.data_type |
| files.error_type |
| files.experimental_strategy |
| files.file_id |
| files.file_name |
| files.file_size |
| files.genome_doubling |
| files.imaging_date |
| files.magnification |
| files.md5sum |
| files.mean_coverage |
| files.msi_score |
| files.msi_status |
| files.pairs_on_diff_chr |
| files.plate_name |
| files.plate_well |
| files.platform |
| files.proportion_base_mismatch |
| files.proportion_coverage_10x |
| files.proportion_coverage_30x |
| files.proportion_reads_duplicated |
| files.proportion_reads_mapped |
| files.proportion_targets_no_coverage |
| files.read_pair_number |
| files.revision |
| files.stain_type |
| files.state |
| files.state_comment |
| files.subclonal_genome_fraction |
| files.submitter_id |
| files.tags |
| files.tmb |
| files.tmb_exonic |
| files.tmb_nonsynonymous |
| files.tmb_nonsynonymous_exonic |
| files.total_reads |
| files.tumor_ploidy |
| files.tumor_purity |
| files.type |
| files.updated_datetime |
| files.wgs_coverage |
| files.analysis.analysis_id |
| files.analysis.analysis_type |
| files.analysis.created_datetime |
| files.analysis.state |
| files.analysis.submitter_id |
| files.analysis.updated_datetime |
| files.analysis.workflow_end_datetime |
| files.analysis.workflow_link |
| files.analysis.workflow_start_datetime |
| files.analysis.workflow_type |
| files.analysis.workflow_version |
| files.analysis.input_files.access |
| files.analysis.input_files.average_base_quality |
| files.analysis.input_files.average_insert_size |
| files.analysis.input_files.average_read_length |
| files.analysis.input_files.cancer_dna_fraction |
| files.analysis.input_files.channel |
| files.analysis.input_files.chip_id |
| files.analysis.input_files.chip_position |
| files.analysis.input_files.contamination |
| files.analysis.input_files.contamination_error |
| files.analysis.input_files.created_datetime |
| files.analysis.input_files.data_category |
| files.analysis.input_files.data_format |
| files.analysis.input_files.data_type |
| files.analysis.input_files.error_type |
| files.analysis.input_files.experimental_strategy |
| files.analysis.input_files.file_id |
| files.analysis.input_files.file_name |
| files.analysis.input_files.file_size |
| files.analysis.input_files.genome_doubling |
| files.analysis.input_files.imaging_date |
| files.analysis.input_files.magnification |
| files.analysis.input_files.md5sum |
| files.analysis.input_files.mean_coverage |
| files.analysis.input_files.msi_score |
| files.analysis.input_files.msi_status |
| files.analysis.input_files.pairs_on_diff_chr |
| files.analysis.input_files.plate_name |
| files.analysis.input_files.plate_well |
| files.analysis.input_files.platform |
| files.analysis.input_files.proportion_base_mismatch |
| files.analysis.input_files.proportion_coverage_10x |
| files.analysis.input_files.proportion_coverage_30x |
| files.analysis.input_files.proportion_reads_duplicated |
| files.analysis.input_files.proportion_reads_mapped |
| files.analysis.input_files.proportion_targets_no_coverage |
| files.analysis.input_files.read_pair_number |
| files.analysis.input_files.revision |
| files.analysis.input_files.stain_type |
| files.analysis.input_files.state |
| files.analysis.input_files.state_comment |
| files.analysis.input_files.subclonal_genome_fraction |
| files.analysis.input_files.submitter_id |
| files.analysis.input_files.tmb |
| files.analysis.input_files.tmb_exonic |
| files.analysis.input_files.tmb_nonsynonymous |
| files.analysis.input_files.tmb_nonsynonymous_exonic |
| files.analysis.input_files.total_reads |
| files.analysis.input_files.tumor_ploidy |
| files.analysis.input_files.tumor_purity |
| files.analysis.input_files.updated_datetime |
| files.analysis.input_files.wgs_coverage |
| files.analysis.metadata.read_groups.adapter_name |
| files.analysis.metadata.read_groups.adapter_sequence |
| files.analysis.metadata.read_groups.base_caller_name |
| files.analysis.metadata.read_groups.base_caller_version |
| files.analysis.metadata.read_groups.chipseq_antibody |
| files.analysis.metadata.read_groups.chipseq_target |
| files.analysis.metadata.read_groups.created_datetime |
| files.analysis.metadata.read_groups.days_to_sequencing |
| files.analysis.metadata.read_groups.experiment_name |
| files.analysis.metadata.read_groups.flow_cell_barcode |
| files.analysis.metadata.read_groups.fragment_maximum_length |
| files.analysis.metadata.read_groups.fragment_mean_length |
| files.analysis.metadata.read_groups.fragment_minimum_length |
| files.analysis.metadata.read_groups.fragment_standard_deviation_length |
| files.analysis.metadata.read_groups.fragmentation_enzyme |
| files.analysis.metadata.read_groups.includes_spike_ins |
| files.analysis.metadata.read_groups.instrument_model |
| files.analysis.metadata.read_groups.is_paired_end |
| files.analysis.metadata.read_groups.lane_number |
| files.analysis.metadata.read_groups.library_name |
| files.analysis.metadata.read_groups.library_preparation_kit_catalog_number |
| files.analysis.metadata.read_groups.library_preparation_kit_name |
| files.analysis.metadata.read_groups.library_preparation_kit_vendor |
| files.analysis.metadata.read_groups.library_preparation_kit_version |
| files.analysis.metadata.read_groups.library_selection |
| files.analysis.metadata.read_groups.library_strand |
| files.analysis.metadata.read_groups.library_strategy |
| files.analysis.metadata.read_groups.multiplex_barcode |
| files.analysis.metadata.read_groups.number_expect_cells |
| files.analysis.metadata.read_groups.platform |
| files.analysis.metadata.read_groups.read_group_id |
| files.analysis.metadata.read_groups.read_group_name |
| files.analysis.metadata.read_groups.read_length |
| files.analysis.metadata.read_groups.rin |
| files.analysis.metadata.read_groups.sequencing_center |
| files.analysis.metadata.read_groups.sequencing_date |
| files.analysis.metadata.read_groups.single_cell_library |
| files.analysis.metadata.read_groups.size_selection_range |
| files.analysis.metadata.read_groups.spike_ins_concentration |
| files.analysis.metadata.read_groups.spike_ins_fasta |
| files.analysis.metadata.read_groups.state |
| files.analysis.metadata.read_groups.submitter_id |
| files.analysis.metadata.read_groups.target_capture_kit |
| files.analysis.metadata.read_groups.target_capture_kit_catalog_number |
| files.analysis.metadata.read_groups.target_capture_kit_name |
| files.analysis.metadata.read_groups.target_capture_kit_target_region |
| files.analysis.metadata.read_groups.target_capture_kit_vendor |
| files.analysis.metadata.read_groups.target_capture_kit_version |
| files.analysis.metadata.read_groups.to_trim_adapter_sequence |
| files.analysis.metadata.read_groups.updated_datetime |
| files.analysis.metadata.read_groups.read_group_qcs.adapter_content |
| files.analysis.metadata.read_groups.read_group_qcs.basic_statistics |
| files.analysis.metadata.read_groups.read_group_qcs.created_datetime |
| files.analysis.metadata.read_groups.read_group_qcs.encoding |
| files.analysis.metadata.read_groups.read_group_qcs.fastq_name |
| files.analysis.metadata.read_groups.read_group_qcs.kmer_content |
| files.analysis.metadata.read_groups.read_group_qcs.overrepresented_sequences |
| files.analysis.metadata.read_groups.read_group_qcs.per_base_n_content |
| files.analysis.metadata.read_groups.read_group_qcs.per_base_sequence_content |
| files.analysis.metadata.read_groups.read_group_qcs.per_base_sequence_quality |
| files.analysis.metadata.read_groups.read_group_qcs.per_sequence_gc_content |
| files.analysis.metadata.read_groups.read_group_qcs.per_sequence_quality_score |
| files.analysis.metadata.read_groups.read_group_qcs.per_tile_sequence_quality |
| files.analysis.metadata.read_groups.read_group_qcs.percent_gc_content |
| files.analysis.metadata.read_groups.read_group_qcs.read_group_qc_id |
| files.analysis.metadata.read_groups.read_group_qcs.sequence_duplication_levels |
| files.analysis.metadata.read_groups.read_group_qcs.sequence_length_distribution |
| files.analysis.metadata.read_groups.read_group_qcs.state |
| files.analysis.metadata.read_groups.read_group_qcs.submitter_id |
| files.analysis.metadata.read_groups.read_group_qcs.total_sequences |
| files.analysis.metadata.read_groups.read_group_qcs.updated_datetime |
| files.analysis.metadata.read_groups.read_group_qcs.workflow_end_datetime |
| files.analysis.metadata.read_groups.read_group_qcs.workflow_link |
| files.analysis.metadata.read_groups.read_group_qcs.workflow_start_datetime |
| files.analysis.metadata.read_groups.read_group_qcs.workflow_type |
| files.analysis.metadata.read_groups.read_group_qcs.workflow_version |
| files.archive.archive_id |
| files.archive.created_datetime |
| files.archive.data_category |
| files.archive.data_format |
| files.archive.data_type |
| files.archive.error_type |
| files.archive.file_name |
| files.archive.file_size |
| files.archive.md5sum |
| files.archive.revision |
| files.archive.state |
| files.archive.state_comment |
| files.archive.submitter_id |
| files.archive.updated_datetime |
| files.center.center_id |
| files.center.center_type |
| files.center.code |
| files.center.name |
| files.center.namespace |
| files.center.short_name |
| files.downstream_analyses.analysis_id |
| files.downstream_analyses.analysis_type |
| files.downstream_analyses.created_datetime |
| files.downstream_analyses.state |
| files.downstream_analyses.submitter_id |
| files.downstream_analyses.updated_datetime |
| files.downstream_analyses.workflow_end_datetime |
| files.downstream_analyses.workflow_link |
| files.downstream_analyses.workflow_start_datetime |
| files.downstream_analyses.workflow_type |
| files.downstream_analyses.workflow_version |
| files.downstream_analyses.output_files.access |
| files.downstream_analyses.output_files.average_base_quality |
| files.downstream_analyses.output_files.average_insert_size |
| files.downstream_analyses.output_files.average_read_length |
| files.downstream_analyses.output_files.cancer_dna_fraction |
| files.downstream_analyses.output_files.channel |
| files.downstream_analyses.output_files.chip_id |
| files.downstream_analyses.output_files.chip_position |
| files.downstream_analyses.output_files.contamination |
| files.downstream_analyses.output_files.contamination_error |
| files.downstream_analyses.output_files.created_datetime |
| files.downstream_analyses.output_files.data_category |
| files.downstream_analyses.output_files.data_format |
| files.downstream_analyses.output_files.data_type |
| files.downstream_analyses.output_files.error_type |
| files.downstream_analyses.output_files.experimental_strategy |
| files.downstream_analyses.output_files.file_id |
| files.downstream_analyses.output_files.file_name |
| files.downstream_analyses.output_files.file_size |
| files.downstream_analyses.output_files.genome_doubling |
| files.downstream_analyses.output_files.imaging_date |
| files.downstream_analyses.output_files.magnification |
| files.downstream_analyses.output_files.md5sum |
| files.downstream_analyses.output_files.mean_coverage |
| files.downstream_analyses.output_files.msi_score |
| files.downstream_analyses.output_files.msi_status |
| files.downstream_analyses.output_files.pairs_on_diff_chr |
| files.downstream_analyses.output_files.plate_name |
| files.downstream_analyses.output_files.plate_well |
| files.downstream_analyses.output_files.platform |
| files.downstream_analyses.output_files.proportion_base_mismatch |
| files.downstream_analyses.output_files.proportion_coverage_10x |
| files.downstream_analyses.output_files.proportion_coverage_30x |
| files.downstream_analyses.output_files.proportion_reads_duplicated |
| files.downstream_analyses.output_files.proportion_reads_mapped |
| files.downstream_analyses.output_files.proportion_targets_no_coverage |
| files.downstream_analyses.output_files.read_pair_number |
| files.downstream_analyses.output_files.revision |
| files.downstream_analyses.output_files.stain_type |
| files.downstream_analyses.output_files.state |
| files.downstream_analyses.output_files.state_comment |
| files.downstream_analyses.output_files.subclonal_genome_fraction |
| files.downstream_analyses.output_files.submitter_id |
| files.downstream_analyses.output_files.tmb |
| files.downstream_analyses.output_files.tmb_exonic |
| files.downstream_analyses.output_files.tmb_nonsynonymous |
| files.downstream_analyses.output_files.tmb_nonsynonymous_exonic |
| files.downstream_analyses.output_files.total_reads |
| files.downstream_analyses.output_files.tumor_ploidy |
| files.downstream_analyses.output_files.tumor_purity |
| files.downstream_analyses.output_files.updated_datetime |
| files.downstream_analyses.output_files.wgs_coverage |
| files.index_files.access |
| files.index_files.average_base_quality |
| files.index_files.average_insert_size |
| files.index_files.average_read_length |
| files.index_files.cancer_dna_fraction |
| files.index_files.channel |
| files.index_files.chip_id |
| files.index_files.chip_position |
| files.index_files.contamination |
| files.index_files.contamination_error |
| files.index_files.created_datetime |
| files.index_files.data_category |
| files.index_files.data_format |
| files.index_files.data_type |
| files.index_files.error_type |
| files.index_files.experimental_strategy |
| files.index_files.file_id |
| files.index_files.file_name |
| files.index_files.file_size |
| files.index_files.genome_doubling |
| files.index_files.imaging_date |
| files.index_files.magnification |
| files.index_files.md5sum |
| files.index_files.mean_coverage |
| files.index_files.msi_score |
| files.index_files.msi_status |
| files.index_files.pairs_on_diff_chr |
| files.index_files.plate_name |
| files.index_files.plate_well |
| files.index_files.platform |
| files.index_files.proportion_base_mismatch |
| files.index_files.proportion_coverage_10x |
| files.index_files.proportion_coverage_30x |
| files.index_files.proportion_reads_duplicated |
| files.index_files.proportion_reads_mapped |
| files.index_files.proportion_targets_no_coverage |
| files.index_files.read_pair_number |
| files.index_files.revision |
| files.index_files.stain_type |
| files.index_files.state |
| files.index_files.state_comment |
| files.index_files.subclonal_genome_fraction |
| files.index_files.submitter_id |
| files.index_files.tmb |
| files.index_files.tmb_exonic |
| files.index_files.tmb_nonsynonymous |
| files.index_files.tmb_nonsynonymous_exonic |
| files.index_files.total_reads |
| files.index_files.tumor_ploidy |
| files.index_files.tumor_purity |
| files.index_files.updated_datetime |
| files.index_files.wgs_coverage |
| files.metadata_files.access |
| files.metadata_files.created_datetime |
| files.metadata_files.data_category |
| files.metadata_files.data_format |
| files.metadata_files.data_type |
| files.metadata_files.error_type |
| files.metadata_files.file_id |
| files.metadata_files.file_name |
| files.metadata_files.file_size |
| files.metadata_files.md5sum |
| files.metadata_files.state |
| files.metadata_files.state_comment |
| files.metadata_files.submitter_id |
| files.metadata_files.type |
| files.metadata_files.updated_datetime |
| follow_ups.adverse_event |
| follow_ups.adverse_event_grade |
| follow_ups.barretts_esophagus_goblet_cells_present |
| follow_ups.cause_of_response |
| follow_ups.created_datetime |
| follow_ups.days_to_adverse_event |
| follow_ups.days_to_first_event |
| follow_ups.days_to_follow_up |
| follow_ups.days_to_imaging |
| follow_ups.days_to_progression |
| follow_ups.days_to_progression_free |
| follow_ups.days_to_recurrence |
| follow_ups.discontiguous_lesion_count |
| follow_ups.disease_response |
| follow_ups.ecog_performance_status |
| follow_ups.evidence_of_progression_type |
| follow_ups.evidence_of_recurrence_type |
| follow_ups.first_event |
| follow_ups.follow_up_id |
| follow_ups.histologic_progression |
| follow_ups.history_of_tumor |
| follow_ups.history_of_tumor_type |
| follow_ups.hormone_replacement_therapy_type |
| follow_ups.imaging_anatomic_site |
| follow_ups.imaging_findings |
| follow_ups.imaging_result |
| follow_ups.imaging_suv |
| follow_ups.imaging_suv_max |
| follow_ups.imaging_type |
| follow_ups.karnofsky_performance_status |
| follow_ups.peritoneal_washing_results |
| follow_ups.procedures_performed |
| follow_ups.progression_or_recurrence |
| follow_ups.progression_or_recurrence_anatomic_site |
| follow_ups.progression_or_recurrence_type |
| follow_ups.recist_targeted_regions_number |
| follow_ups.recist_targeted_regions_sum |
| follow_ups.scan_tracer_used |
| follow_ups.state |
| follow_ups.submitter_id |
| follow_ups.timepoint_category |
| follow_ups.treatment_emergent_adverse_event |
| follow_ups.updated_datetime |
| follow_ups.year_of_follow_up |
| follow_ups.molecular_tests.aa_change |
| follow_ups.molecular_tests.aneuploidy |
| follow_ups.molecular_tests.antigen |
| follow_ups.molecular_tests.biospecimen_type |
| follow_ups.molecular_tests.biospecimen_volume |
| follow_ups.molecular_tests.blood_test_normal_range_lower |
| follow_ups.molecular_tests.blood_test_normal_range_upper |
| follow_ups.molecular_tests.cell_count |
| follow_ups.molecular_tests.chromosomal_translocation |
| follow_ups.molecular_tests.chromosome |
| follow_ups.molecular_tests.chromosome_arm |
| follow_ups.molecular_tests.clonality |
| follow_ups.molecular_tests.copy_number |
| follow_ups.molecular_tests.created_datetime |
| follow_ups.molecular_tests.cytoband |
| follow_ups.molecular_tests.days_to_test |
| follow_ups.molecular_tests.exon |
| follow_ups.molecular_tests.gene_symbol |
| follow_ups.molecular_tests.histone_family |
| follow_ups.molecular_tests.histone_variant |
| follow_ups.molecular_tests.hpv_strain |
| follow_ups.molecular_tests.intron |
| follow_ups.molecular_tests.laboratory_test |
| follow_ups.molecular_tests.loci_abnormal_count |
| follow_ups.molecular_tests.loci_count |
| follow_ups.molecular_tests.locus |
| follow_ups.molecular_tests.mismatch_repair_mutation |
| follow_ups.molecular_tests.mitotic_count |
| follow_ups.molecular_tests.mitotic_total_area |
| follow_ups.molecular_tests.molecular_analysis_method |
| follow_ups.molecular_tests.molecular_consequence |
| follow_ups.molecular_tests.molecular_test_id |
| follow_ups.molecular_tests.mutation_codon |
| follow_ups.molecular_tests.pathogenicity |
| follow_ups.molecular_tests.ploidy |
| follow_ups.molecular_tests.second_exon |
| follow_ups.molecular_tests.second_gene_symbol |
| follow_ups.molecular_tests.specialized_molecular_test |
| follow_ups.molecular_tests.staining_intensity_scale |
| follow_ups.molecular_tests.staining_intensity_value |
| follow_ups.molecular_tests.state |
| follow_ups.molecular_tests.submitter_id |
| follow_ups.molecular_tests.test_analyte_type |
| follow_ups.molecular_tests.test_result |
| follow_ups.molecular_tests.test_units |
| follow_ups.molecular_tests.test_value |
| follow_ups.molecular_tests.test_value_range |
| follow_ups.molecular_tests.timepoint_category |
| follow_ups.molecular_tests.transcript |
| follow_ups.molecular_tests.updated_datetime |
| follow_ups.molecular_tests.variant_origin |
| follow_ups.molecular_tests.variant_type |
| follow_ups.molecular_tests.zygosity |
| follow_ups.other_clinical_attributes.aids_risk_factors |
| follow_ups.other_clinical_attributes.bmi |
| follow_ups.other_clinical_attributes.body_surface_area |
| follow_ups.other_clinical_attributes.cd4_count |
| follow_ups.other_clinical_attributes.cdc_hiv_risk_factors |
| follow_ups.other_clinical_attributes.comorbidities |
| follow_ups.other_clinical_attributes.comorbidity_method_of_diagnosis |
| follow_ups.other_clinical_attributes.created_datetime |
| follow_ups.other_clinical_attributes.days_to_comorbidity |
| follow_ups.other_clinical_attributes.days_to_risk_factor |
| follow_ups.other_clinical_attributes.diabetes_treatment_type |
| follow_ups.other_clinical_attributes.dlco_ref_predictive_percent |
| follow_ups.other_clinical_attributes.exercise_frequency_weekly |
| follow_ups.other_clinical_attributes.eye_color |
| follow_ups.other_clinical_attributes.fertility_history |
| follow_ups.other_clinical_attributes.fev1_fvc_post_bronch_percent |
| follow_ups.other_clinical_attributes.fev1_fvc_pre_bronch_percent |
| follow_ups.other_clinical_attributes.fev1_ref_post_bronch_percent |
| follow_ups.other_clinical_attributes.fev1_ref_pre_bronch_percent |
| follow_ups.other_clinical_attributes.haart_treatment_indicator |
| follow_ups.other_clinical_attributes.height |
| follow_ups.other_clinical_attributes.hepatitis_sustained_virological_response |
| follow_ups.other_clinical_attributes.hiv_viral_load |
| follow_ups.other_clinical_attributes.hormonal_contraceptive_type |
| follow_ups.other_clinical_attributes.hormonal_contraceptive_use |
| follow_ups.other_clinical_attributes.hormonal_replacement_therapy_status |
| follow_ups.other_clinical_attributes.hormone_replacement_therapy_type |
| follow_ups.other_clinical_attributes.hysterectomy_margins_involved |
| follow_ups.other_clinical_attributes.hysterectomy_type |
| follow_ups.other_clinical_attributes.immunosuppressive_treatment_type |
| follow_ups.other_clinical_attributes.menopause_status |
| follow_ups.other_clinical_attributes.myasthenia_gravis_classification |
| follow_ups.other_clinical_attributes.nadir_cd4_count |
| follow_ups.other_clinical_attributes.nononcologic_therapeutic_agents |
| follow_ups.other_clinical_attributes.number_of_pregnancies |
| follow_ups.other_clinical_attributes.other_clinical_attribute_id |
| follow_ups.other_clinical_attributes.oxygen_use_indicator |
| follow_ups.other_clinical_attributes.oxygen_use_type |
| follow_ups.other_clinical_attributes.pancreatitis_onset_year |
| follow_ups.other_clinical_attributes.pregnancy_outcome |
| follow_ups.other_clinical_attributes.pregnant_at_diagnosis |
| follow_ups.other_clinical_attributes.premature_at_birth |
| follow_ups.other_clinical_attributes.reflux_treatment_type |
| follow_ups.other_clinical_attributes.risk_factor_method_of_diagnosis |
| follow_ups.other_clinical_attributes.risk_factor_treatment |
| follow_ups.other_clinical_attributes.risk_factors |
| follow_ups.other_clinical_attributes.state |
| follow_ups.other_clinical_attributes.submitter_id |
| follow_ups.other_clinical_attributes.timepoint_category |
| follow_ups.other_clinical_attributes.treatment_frequency |
| follow_ups.other_clinical_attributes.undescended_testis_corrected |
| follow_ups.other_clinical_attributes.undescended_testis_corrected_age |
| follow_ups.other_clinical_attributes.undescended_testis_corrected_age_range |
| follow_ups.other_clinical_attributes.undescended_testis_corrected_laterality |
| follow_ups.other_clinical_attributes.undescended_testis_corrected_method |
| follow_ups.other_clinical_attributes.undescended_testis_history |
| follow_ups.other_clinical_attributes.undescended_testis_history_laterality |
| follow_ups.other_clinical_attributes.updated_datetime |
| follow_ups.other_clinical_attributes.viral_hepatitis_serology_tests |
| follow_ups.other_clinical_attributes.weeks_gestation_at_birth |
| follow_ups.other_clinical_attributes.weight |
| project.dbgap_accession_number |
| project.disease_type |
| project.name |
| project.primary_site |
| project.released |
| project.state |
| project.program.dbgap_accession_number |
| project.program.name |
| project.program.program_id |
| samples.biospecimen_anatomic_site |
| samples.biospecimen_laterality |
| samples.catalog_reference |
| samples.created_datetime |
| samples.current_weight |
| samples.days_to_collection |
| samples.days_to_sample_procurement |
| samples.diagnosis_pathologically_confirmed |
| samples.distance_normal_to_tumor |
| samples.distributor_reference |
| samples.freezing_method |
| samples.growth_rate |
| samples.initial_weight |
| samples.intermediate_dimension |
| samples.longest_dimension |
| samples.method_of_sample_procurement |
| samples.passage_count |
| samples.pathology_report_uuid |
| samples.preservation_method |
| samples.sample_id |
| samples.sample_ordinal |
| samples.sample_type |
| samples.shortest_dimension |
| samples.specimen_type |
| samples.state |
| samples.submitter_id |
| samples.time_between_clamping_and_freezing |
| samples.time_between_excision_and_freezing |
| samples.tissue_collection_type |
| samples.tissue_type |
| samples.tumor_code_id |
| samples.tumor_descriptor |
| samples.updated_datetime |
| samples.annotations.annotation_id |
| samples.annotations.case_id |
| samples.annotations.case_submitter_id |
| samples.annotations.category |
| samples.annotations.classification |
| samples.annotations.created_datetime |
| samples.annotations.creator |
| samples.annotations.entity_id |
| samples.annotations.entity_submitter_id |
| samples.annotations.entity_type |
| samples.annotations.legacy_created_datetime |
| samples.annotations.legacy_updated_datetime |
| samples.annotations.notes |
| samples.annotations.state |
| samples.annotations.status |
| samples.annotations.submitter_id |
| samples.annotations.updated_datetime |
| samples.portions.created_datetime |
| samples.portions.creation_datetime |
| samples.portions.is_ffpe |
| samples.portions.portion_id |
| samples.portions.portion_number |
| samples.portions.state |
| samples.portions.submitter_id |
| samples.portions.updated_datetime |
| samples.portions.weight |
| samples.portions.analytes.a260_a280_ratio |
| samples.portions.analytes.amount |
| samples.portions.analytes.analyte_id |
| samples.portions.analytes.analyte_quantity |
| samples.portions.analytes.analyte_type |
| samples.portions.analytes.analyte_volume |
| samples.portions.analytes.concentration |
| samples.portions.analytes.created_datetime |
| samples.portions.analytes.dna_integrity_number |
| samples.portions.analytes.experimental_protocol_type |
| samples.portions.analytes.normal_tumor_genotype_snp_match |
| samples.portions.analytes.ribosomal_rna_28s_16s_ratio |
| samples.portions.analytes.ribosomal_rna_28s_18s_ratio |
| samples.portions.analytes.rna_integrity_number |
| samples.portions.analytes.spectrophotometer_method |
| samples.portions.analytes.state |
| samples.portions.analytes.submitter_id |
| samples.portions.analytes.updated_datetime |
| samples.portions.analytes.well_number |
| samples.portions.analytes.aliquots.aliquot_id |
| samples.portions.analytes.aliquots.aliquot_quantity |
| samples.portions.analytes.aliquots.aliquot_volume |
| samples.portions.analytes.aliquots.amount |
| samples.portions.analytes.aliquots.analyte_type |
| samples.portions.analytes.aliquots.concentration |
| samples.portions.analytes.aliquots.created_datetime |
| samples.portions.analytes.aliquots.no_matched_normal_low_pass_wgs |
| samples.portions.analytes.aliquots.no_matched_normal_targeted_sequencing |
| samples.portions.analytes.aliquots.no_matched_normal_wgs |
| samples.portions.analytes.aliquots.no_matched_normal_wxs |
| samples.portions.analytes.aliquots.selected_normal_low_pass_wgs |
| samples.portions.analytes.aliquots.selected_normal_targeted_sequencing |
| samples.portions.analytes.aliquots.selected_normal_wgs |
| samples.portions.analytes.aliquots.selected_normal_wxs |
| samples.portions.analytes.aliquots.source_center |
| samples.portions.analytes.aliquots.state |
| samples.portions.analytes.aliquots.submitter_id |
| samples.portions.analytes.aliquots.updated_datetime |
| samples.portions.analytes.aliquots.annotations.annotation_id |
| samples.portions.analytes.aliquots.annotations.case_id |
| samples.portions.analytes.aliquots.annotations.case_submitter_id |
| samples.portions.analytes.aliquots.annotations.category |
| samples.portions.analytes.aliquots.annotations.classification |
| samples.portions.analytes.aliquots.annotations.created_datetime |
| samples.portions.analytes.aliquots.annotations.creator |
| samples.portions.analytes.aliquots.annotations.entity_id |
| samples.portions.analytes.aliquots.annotations.entity_submitter_id |
| samples.portions.analytes.aliquots.annotations.entity_type |
| samples.portions.analytes.aliquots.annotations.legacy_created_datetime |
| samples.portions.analytes.aliquots.annotations.legacy_updated_datetime |
| samples.portions.analytes.aliquots.annotations.notes |
| samples.portions.analytes.aliquots.annotations.state |
| samples.portions.analytes.aliquots.annotations.status |
| samples.portions.analytes.aliquots.annotations.submitter_id |
| samples.portions.analytes.aliquots.annotations.updated_datetime |
| samples.portions.analytes.aliquots.center.center_id |
| samples.portions.analytes.aliquots.center.center_type |
| samples.portions.analytes.aliquots.center.code |
| samples.portions.analytes.aliquots.center.name |
| samples.portions.analytes.aliquots.center.namespace |
| samples.portions.analytes.aliquots.center.short_name |
| samples.portions.analytes.annotations.annotation_id |
| samples.portions.analytes.annotations.case_id |
| samples.portions.analytes.annotations.case_submitter_id |
| samples.portions.analytes.annotations.category |
| samples.portions.analytes.annotations.classification |
| samples.portions.analytes.annotations.created_datetime |
| samples.portions.analytes.annotations.creator |
| samples.portions.analytes.annotations.entity_id |
| samples.portions.analytes.annotations.entity_submitter_id |
| samples.portions.analytes.annotations.entity_type |
| samples.portions.analytes.annotations.legacy_created_datetime |
| samples.portions.analytes.annotations.legacy_updated_datetime |
| samples.portions.analytes.annotations.notes |
| samples.portions.analytes.annotations.state |
| samples.portions.analytes.annotations.status |
| samples.portions.analytes.annotations.submitter_id |
| samples.portions.analytes.annotations.updated_datetime |
| samples.portions.annotations.annotation_id |
| samples.portions.annotations.case_id |
| samples.portions.annotations.case_submitter_id |
| samples.portions.annotations.category |
| samples.portions.annotations.classification |
| samples.portions.annotations.created_datetime |
| samples.portions.annotations.creator |
| samples.portions.annotations.entity_id |
| samples.portions.annotations.entity_submitter_id |
| samples.portions.annotations.entity_type |
| samples.portions.annotations.legacy_created_datetime |
| samples.portions.annotations.legacy_updated_datetime |
| samples.portions.annotations.notes |
| samples.portions.annotations.state |
| samples.portions.annotations.status |
| samples.portions.annotations.submitter_id |
| samples.portions.annotations.updated_datetime |
| samples.portions.center.center_id |
| samples.portions.center.center_type |
| samples.portions.center.code |
| samples.portions.center.name |
| samples.portions.center.namespace |
| samples.portions.center.short_name |
| samples.portions.slides.bone_marrow_malignant_cells |
| samples.portions.slides.created_datetime |
| samples.portions.slides.number_proliferating_cells |
| samples.portions.slides.percent_eosinophil_infiltration |
| samples.portions.slides.percent_follicular_component |
| samples.portions.slides.percent_granulocyte_infiltration |
| samples.portions.slides.percent_inflam_infiltration |
| samples.portions.slides.percent_lymphocyte_infiltration |
| samples.portions.slides.percent_monocyte_infiltration |
| samples.portions.slides.percent_necrosis |
| samples.portions.slides.percent_neutrophil_infiltration |
| samples.portions.slides.percent_normal_cells |
| samples.portions.slides.percent_rhabdoid_features |
| samples.portions.slides.percent_sarcomatoid_features |
| samples.portions.slides.percent_stromal_cells |
| samples.portions.slides.percent_tumor_cells |
| samples.portions.slides.percent_tumor_nuclei |
| samples.portions.slides.prostatic_chips_positive_count |
| samples.portions.slides.prostatic_chips_total_count |
| samples.portions.slides.prostatic_involvement_percent |
| samples.portions.slides.section_location |
| samples.portions.slides.slide_id |
| samples.portions.slides.state |
| samples.portions.slides.submitter_id |
| samples.portions.slides.tissue_microarray_coordinates |
| samples.portions.slides.updated_datetime |
| samples.portions.slides.annotations.annotation_id |
| samples.portions.slides.annotations.case_id |
| samples.portions.slides.annotations.case_submitter_id |
| samples.portions.slides.annotations.category |
| samples.portions.slides.annotations.classification |
| samples.portions.slides.annotations.created_datetime |
| samples.portions.slides.annotations.creator |
| samples.portions.slides.annotations.entity_id |
| samples.portions.slides.annotations.entity_submitter_id |
| samples.portions.slides.annotations.entity_type |
| samples.portions.slides.annotations.legacy_created_datetime |
| samples.portions.slides.annotations.legacy_updated_datetime |
| samples.portions.slides.annotations.notes |
| samples.portions.slides.annotations.state |
| samples.portions.slides.annotations.status |
| samples.portions.slides.annotations.submitter_id |
| samples.portions.slides.annotations.updated_datetime |
| summary.file_count |
| summary.file_size |
| summary.data_categories.data_category |
| summary.data_categories.file_count |
| summary.experimental_strategies.experimental_strategy |
| summary.experimental_strategies.file_count |
| tissue_source_site.bcr_id |
| tissue_source_site.code |
| tissue_source_site.name |
| tissue_source_site.project |
| tissue_source_site.tissue_source_site_id |
File Fields
| Field Name |
|---|
| access |
| acl |
| average_base_quality |
| average_insert_size |
| average_read_length |
| cancer_dna_fraction |
| channel |
| chip_id |
| chip_position |
| contamination |
| contamination_error |
| created_datetime |
| data_category |
| data_format |
| data_type |
| error_type |
| experimental_strategy |
| file_id |
| file_name |
| file_size |
| genome_doubling |
| imaging_date |
| magnification |
| md5sum |
| mean_coverage |
| msi_score |
| msi_status |
| pairs_on_diff_chr |
| plate_name |
| plate_well |
| platform |
| proportion_base_mismatch |
| proportion_coverage_10x |
| proportion_coverage_30x |
| proportion_reads_duplicated |
| proportion_reads_mapped |
| proportion_targets_no_coverage |
| read_pair_number |
| revision |
| stain_type |
| state |
| state_comment |
| subclonal_genome_fraction |
| submitter_id |
| tags |
| tmb |
| tmb_exonic |
| tmb_nonsynonymous |
| tmb_nonsynonymous_exonic |
| total_reads |
| tumor_ploidy |
| tumor_purity |
| type |
| updated_datetime |
| wgs_coverage |
| analysis.analysis_id |
| analysis.analysis_type |
| analysis.created_datetime |
| analysis.state |
| analysis.submitter_id |
| analysis.updated_datetime |
| analysis.workflow_end_datetime |
| analysis.workflow_link |
| analysis.workflow_start_datetime |
| analysis.workflow_type |
| analysis.workflow_version |
| analysis.input_files.access |
| analysis.input_files.average_base_quality |
| analysis.input_files.average_insert_size |
| analysis.input_files.average_read_length |
| analysis.input_files.cancer_dna_fraction |
| analysis.input_files.channel |
| analysis.input_files.chip_id |
| analysis.input_files.chip_position |
| analysis.input_files.contamination |
| analysis.input_files.contamination_error |
| analysis.input_files.created_datetime |
| analysis.input_files.data_category |
| analysis.input_files.data_format |
| analysis.input_files.data_type |
| analysis.input_files.error_type |
| analysis.input_files.experimental_strategy |
| analysis.input_files.file_id |
| analysis.input_files.file_name |
| analysis.input_files.file_size |
| analysis.input_files.genome_doubling |
| analysis.input_files.imaging_date |
| analysis.input_files.magnification |
| analysis.input_files.md5sum |
| analysis.input_files.mean_coverage |
| analysis.input_files.msi_score |
| analysis.input_files.msi_status |
| analysis.input_files.pairs_on_diff_chr |
| analysis.input_files.plate_name |
| analysis.input_files.plate_well |
| analysis.input_files.platform |
| analysis.input_files.proportion_base_mismatch |
| analysis.input_files.proportion_coverage_10x |
| analysis.input_files.proportion_coverage_30x |
| analysis.input_files.proportion_reads_duplicated |
| analysis.input_files.proportion_reads_mapped |
| analysis.input_files.proportion_targets_no_coverage |
| analysis.input_files.read_pair_number |
| analysis.input_files.revision |
| analysis.input_files.stain_type |
| analysis.input_files.state |
| analysis.input_files.state_comment |
| analysis.input_files.subclonal_genome_fraction |
| analysis.input_files.submitter_id |
| analysis.input_files.tmb |
| analysis.input_files.tmb_exonic |
| analysis.input_files.tmb_nonsynonymous |
| analysis.input_files.tmb_nonsynonymous_exonic |
| analysis.input_files.total_reads |
| analysis.input_files.tumor_ploidy |
| analysis.input_files.tumor_purity |
| analysis.input_files.updated_datetime |
| analysis.input_files.wgs_coverage |
| analysis.metadata.read_groups.adapter_name |
| analysis.metadata.read_groups.adapter_sequence |
| analysis.metadata.read_groups.base_caller_name |
| analysis.metadata.read_groups.base_caller_version |
| analysis.metadata.read_groups.chipseq_antibody |
| analysis.metadata.read_groups.chipseq_target |
| analysis.metadata.read_groups.created_datetime |
| analysis.metadata.read_groups.days_to_sequencing |
| analysis.metadata.read_groups.experiment_name |
| analysis.metadata.read_groups.flow_cell_barcode |
| analysis.metadata.read_groups.fragment_maximum_length |
| analysis.metadata.read_groups.fragment_mean_length |
| analysis.metadata.read_groups.fragment_minimum_length |
| analysis.metadata.read_groups.fragment_standard_deviation_length |
| analysis.metadata.read_groups.fragmentation_enzyme |
| analysis.metadata.read_groups.includes_spike_ins |
| analysis.metadata.read_groups.instrument_model |
| analysis.metadata.read_groups.is_paired_end |
| analysis.metadata.read_groups.lane_number |
| analysis.metadata.read_groups.library_name |
| analysis.metadata.read_groups.library_preparation_kit_catalog_number |
| analysis.metadata.read_groups.library_preparation_kit_name |
| analysis.metadata.read_groups.library_preparation_kit_vendor |
| analysis.metadata.read_groups.library_preparation_kit_version |
| analysis.metadata.read_groups.library_selection |
| analysis.metadata.read_groups.library_strand |
| analysis.metadata.read_groups.library_strategy |
| analysis.metadata.read_groups.multiplex_barcode |
| analysis.metadata.read_groups.number_expect_cells |
| analysis.metadata.read_groups.platform |
| analysis.metadata.read_groups.read_group_id |
| analysis.metadata.read_groups.read_group_name |
| analysis.metadata.read_groups.read_length |
| analysis.metadata.read_groups.rin |
| analysis.metadata.read_groups.sequencing_center |
| analysis.metadata.read_groups.sequencing_date |
| analysis.metadata.read_groups.single_cell_library |
| analysis.metadata.read_groups.size_selection_range |
| analysis.metadata.read_groups.spike_ins_concentration |
| analysis.metadata.read_groups.spike_ins_fasta |
| analysis.metadata.read_groups.state |
| analysis.metadata.read_groups.submitter_id |
| analysis.metadata.read_groups.target_capture_kit |
| analysis.metadata.read_groups.target_capture_kit_catalog_number |
| analysis.metadata.read_groups.target_capture_kit_name |
| analysis.metadata.read_groups.target_capture_kit_target_region |
| analysis.metadata.read_groups.target_capture_kit_vendor |
| analysis.metadata.read_groups.target_capture_kit_version |
| analysis.metadata.read_groups.to_trim_adapter_sequence |
| analysis.metadata.read_groups.updated_datetime |
| analysis.metadata.read_groups.read_group_qcs.adapter_content |
| analysis.metadata.read_groups.read_group_qcs.basic_statistics |
| analysis.metadata.read_groups.read_group_qcs.created_datetime |
| analysis.metadata.read_groups.read_group_qcs.encoding |
| analysis.metadata.read_groups.read_group_qcs.fastq_name |
| analysis.metadata.read_groups.read_group_qcs.kmer_content |
| analysis.metadata.read_groups.read_group_qcs.overrepresented_sequences |
| analysis.metadata.read_groups.read_group_qcs.per_base_n_content |
| analysis.metadata.read_groups.read_group_qcs.per_base_sequence_content |
| analysis.metadata.read_groups.read_group_qcs.per_base_sequence_quality |
| analysis.metadata.read_groups.read_group_qcs.per_sequence_gc_content |
| analysis.metadata.read_groups.read_group_qcs.per_sequence_quality_score |
| analysis.metadata.read_groups.read_group_qcs.per_tile_sequence_quality |
| analysis.metadata.read_groups.read_group_qcs.percent_gc_content |
| analysis.metadata.read_groups.read_group_qcs.read_group_qc_id |
| analysis.metadata.read_groups.read_group_qcs.sequence_duplication_levels |
| analysis.metadata.read_groups.read_group_qcs.sequence_length_distribution |
| analysis.metadata.read_groups.read_group_qcs.state |
| analysis.metadata.read_groups.read_group_qcs.submitter_id |
| analysis.metadata.read_groups.read_group_qcs.total_sequences |
| analysis.metadata.read_groups.read_group_qcs.updated_datetime |
| analysis.metadata.read_groups.read_group_qcs.workflow_end_datetime |
| analysis.metadata.read_groups.read_group_qcs.workflow_link |
| analysis.metadata.read_groups.read_group_qcs.workflow_start_datetime |
| analysis.metadata.read_groups.read_group_qcs.workflow_type |
| analysis.metadata.read_groups.read_group_qcs.workflow_version |
| annotations.annotation_id |
| annotations.case_id |
| annotations.case_submitter_id |
| annotations.category |
| annotations.classification |
| annotations.created_datetime |
| annotations.creator |
| annotations.entity_id |
| annotations.entity_submitter_id |
| annotations.entity_type |
| annotations.legacy_created_datetime |
| annotations.legacy_updated_datetime |
| annotations.notes |
| annotations.state |
| annotations.status |
| annotations.submitter_id |
| annotations.updated_datetime |
| archive.archive_id |
| archive.created_datetime |
| archive.data_category |
| archive.data_format |
| archive.data_type |
| archive.error_type |
| archive.file_name |
| archive.file_size |
| archive.md5sum |
| archive.revision |
| archive.state |
| archive.state_comment |
| archive.submitter_id |
| archive.updated_datetime |
| associated_entities.case_id |
| associated_entities.entity_id |
| associated_entities.entity_submitter_id |
| associated_entities.entity_type |
| cases.aliquot_ids |
| cases.analyte_ids |
| cases.case_id |
| cases.consent_type |
| cases.created_datetime |
| cases.days_to_consent |
| cases.days_to_lost_to_followup |
| cases.diagnosis_ids |
| cases.disease_type |
| cases.index_date |
| cases.lost_to_followup |
| cases.portion_ids |
| cases.primary_site |
| cases.sample_ids |
| cases.slide_ids |
| cases.state |
| cases.submitter_aliquot_ids |
| cases.submitter_analyte_ids |
| cases.submitter_diagnosis_ids |
| cases.submitter_id |
| cases.submitter_portion_ids |
| cases.submitter_sample_ids |
| cases.submitter_slide_ids |
| cases.updated_datetime |
| cases.annotations.annotation_id |
| cases.annotations.case_id |
| cases.annotations.case_submitter_id |
| cases.annotations.category |
| cases.annotations.classification |
| cases.annotations.created_datetime |
| cases.annotations.creator |
| cases.annotations.entity_id |
| cases.annotations.entity_submitter_id |
| cases.annotations.entity_type |
| cases.annotations.legacy_created_datetime |
| cases.annotations.legacy_updated_datetime |
| cases.annotations.notes |
| cases.annotations.state |
| cases.annotations.status |
| cases.annotations.submitter_id |
| cases.annotations.updated_datetime |
| cases.demographic.age_at_index |
| cases.demographic.age_is_obfuscated |
| cases.demographic.cause_of_death |
| cases.demographic.cause_of_death_source |
| cases.demographic.country_of_birth |
| cases.demographic.country_of_residence_at_enrollment |
| cases.demographic.created_datetime |
| cases.demographic.days_to_birth |
| cases.demographic.days_to_death |
| cases.demographic.demographic_id |
| cases.demographic.education_level |
| cases.demographic.ethnicity |
| cases.demographic.marital_status |
| cases.demographic.occupation_duration_years |
| cases.demographic.population_group |
| cases.demographic.race |
| cases.demographic.sex_at_birth |
| cases.demographic.state |
| cases.demographic.submitter_id |
| cases.demographic.updated_datetime |
| cases.demographic.vital_status |
| cases.demographic.year_of_birth |
| cases.demographic.year_of_death |
| cases.diagnoses.adrenal_hormone |
| cases.diagnoses.age_at_diagnosis |
| cases.diagnoses.ajcc_clinical_m |
| cases.diagnoses.ajcc_clinical_n |
| cases.diagnoses.ajcc_clinical_stage |
| cases.diagnoses.ajcc_clinical_t |
| cases.diagnoses.ajcc_pathologic_m |
| cases.diagnoses.ajcc_pathologic_n |
| cases.diagnoses.ajcc_pathologic_stage |
| cases.diagnoses.ajcc_pathologic_t |
| cases.diagnoses.ajcc_serum_tumor_markers |
| cases.diagnoses.ajcc_staging_system_edition |
| cases.diagnoses.ann_arbor_b_symptoms |
| cases.diagnoses.ann_arbor_b_symptoms_described |
| cases.diagnoses.ann_arbor_clinical_stage |
| cases.diagnoses.ann_arbor_extranodal_involvement |
| cases.diagnoses.ann_arbor_pathologic_stage |
| cases.diagnoses.best_overall_response |
| cases.diagnoses.burkitt_lymphoma_clinical_variant |
| cases.diagnoses.calgb_risk_group |
| cases.diagnoses.cancer_detection_method |
| cases.diagnoses.child_pugh_classification |
| cases.diagnoses.clark_level |
| cases.diagnoses.classification_of_tumor |
| cases.diagnoses.cog_liver_stage |
| cases.diagnoses.cog_neuroblastoma_risk_group |
| cases.diagnoses.cog_renal_stage |
| cases.diagnoses.cog_rhabdomyosarcoma_risk_group |
| cases.diagnoses.contiguous_organ_invaded |
| cases.diagnoses.created_datetime |
| cases.diagnoses.days_to_best_overall_response |
| cases.diagnoses.days_to_diagnosis |
| cases.diagnoses.days_to_last_follow_up |
| cases.diagnoses.days_to_last_known_disease_status |
| cases.diagnoses.days_to_recurrence |
| cases.diagnoses.diagnosis_id |
| cases.diagnoses.diagnosis_is_primary_disease |
| cases.diagnoses.double_expressor_lymphoma |
| cases.diagnoses.double_hit_lymphoma |
| cases.diagnoses.eln_risk_classification |
| cases.diagnoses.enneking_msts_grade |
| cases.diagnoses.enneking_msts_metastasis |
| cases.diagnoses.enneking_msts_stage |
| cases.diagnoses.enneking_msts_tumor_site |
| cases.diagnoses.ensat_clinical_m |
| cases.diagnoses.ensat_pathologic_n |
| cases.diagnoses.ensat_pathologic_stage |
| cases.diagnoses.ensat_pathologic_t |
| cases.diagnoses.esophageal_columnar_dysplasia_degree |
| cases.diagnoses.esophageal_columnar_metaplasia_present |
| cases.diagnoses.fab_morphology_code |
| cases.diagnoses.figo_stage |
| cases.diagnoses.figo_staging_edition_year |
| cases.diagnoses.first_symptom_longest_duration |
| cases.diagnoses.first_symptom_prior_to_diagnosis |
| cases.diagnoses.gastric_esophageal_junction_involvement |
| cases.diagnoses.gleason_grade_group |
| cases.diagnoses.gleason_grade_tertiary |
| cases.diagnoses.gleason_patterns_percent |
| cases.diagnoses.gleason_score |
| cases.diagnoses.goblet_cells_columnar_mucosa_present |
| cases.diagnoses.icd_10_code |
| cases.diagnoses.igcccg_stage |
| cases.diagnoses.inpc_grade |
| cases.diagnoses.inpc_histologic_group |
| cases.diagnoses.inrg_stage |
| cases.diagnoses.inss_stage |
| cases.diagnoses.international_prognostic_index |
| cases.diagnoses.irs_group |
| cases.diagnoses.irs_stage |
| cases.diagnoses.ishak_fibrosis_score |
| cases.diagnoses.iss_stage |
| cases.diagnoses.last_known_disease_status |
| cases.diagnoses.laterality |
| cases.diagnoses.margin_distance |
| cases.diagnoses.margins_involved_site |
| cases.diagnoses.masaoka_stage |
| cases.diagnoses.max_tumor_bulk_site |
| cases.diagnoses.medulloblastoma_molecular_classification |
| cases.diagnoses.melanoma_known_primary |
| cases.diagnoses.metastasis_at_diagnosis |
| cases.diagnoses.method_of_diagnosis |
| cases.diagnoses.mitosis_karyorrhexis_index |
| cases.diagnoses.morphology |
| cases.diagnoses.ovarian_specimen_status |
| cases.diagnoses.ovarian_surface_involvement |
| cases.diagnoses.pediatric_kidney_staging |
| cases.diagnoses.peritoneal_fluid_cytological_status |
| cases.diagnoses.primary_diagnosis |
| cases.diagnoses.primary_gleason_grade |
| cases.diagnoses.prior_malignancy |
| cases.diagnoses.prior_treatment |
| cases.diagnoses.progression_or_recurrence |
| cases.diagnoses.residual_disease |
| cases.diagnoses.satellite_nodule_present |
| cases.diagnoses.secondary_gleason_grade |
| cases.diagnoses.site_of_resection_or_biopsy |
| cases.diagnoses.sites_of_involvement |
| cases.diagnoses.sites_of_involvement_count |
| cases.diagnoses.state |
| cases.diagnoses.submitter_id |
| cases.diagnoses.supratentorial_localization |
| cases.diagnoses.synchronous_malignancy |
| cases.diagnoses.tissue_or_organ_of_origin |
| cases.diagnoses.tumor_burden |
| cases.diagnoses.tumor_confined_to_organ_of_origin |
| cases.diagnoses.tumor_depth |
| cases.diagnoses.tumor_focality |
| cases.diagnoses.tumor_grade |
| cases.diagnoses.tumor_grade_category |
| cases.diagnoses.tumor_of_origin |
| cases.diagnoses.tumor_regression_grade |
| cases.diagnoses.uicc_clinical_m |
| cases.diagnoses.uicc_clinical_n |
| cases.diagnoses.uicc_clinical_stage |
| cases.diagnoses.uicc_clinical_t |
| cases.diagnoses.uicc_pathologic_m |
| cases.diagnoses.uicc_pathologic_n |
| cases.diagnoses.uicc_pathologic_stage |
| cases.diagnoses.uicc_pathologic_t |
| cases.diagnoses.uicc_staging_system_edition |
| cases.diagnoses.ulceration_indicator |
| cases.diagnoses.updated_datetime |
| cases.diagnoses.weiss_assessment_findings |
| cases.diagnoses.weiss_assessment_score |
| cases.diagnoses.who_cns_grade |
| cases.diagnoses.who_nte_grade |
| cases.diagnoses.wilms_tumor_histologic_subtype |
| cases.diagnoses.year_of_diagnosis |
| cases.diagnoses.annotations.annotation_id |
| cases.diagnoses.annotations.case_id |
| cases.diagnoses.annotations.case_submitter_id |
| cases.diagnoses.annotations.category |
| cases.diagnoses.annotations.classification |
| cases.diagnoses.annotations.created_datetime |
| cases.diagnoses.annotations.creator |
| cases.diagnoses.annotations.entity_id |
| cases.diagnoses.annotations.entity_submitter_id |
| cases.diagnoses.annotations.entity_type |
| cases.diagnoses.annotations.legacy_created_datetime |
| cases.diagnoses.annotations.legacy_updated_datetime |
| cases.diagnoses.annotations.notes |
| cases.diagnoses.annotations.state |
| cases.diagnoses.annotations.status |
| cases.diagnoses.annotations.submitter_id |
| cases.diagnoses.annotations.updated_datetime |
| cases.diagnoses.pathology_details.additional_pathology_findings |
| cases.diagnoses.pathology_details.anaplasia_present |
| cases.diagnoses.pathology_details.anaplasia_present_type |
| cases.diagnoses.pathology_details.bone_marrow_malignant_cells |
| cases.diagnoses.pathology_details.breslow_thickness |
| cases.diagnoses.pathology_details.breslow_thickness_category |
| cases.diagnoses.pathology_details.circumferential_resection_margin |
| cases.diagnoses.pathology_details.columnar_mucosa_present |
| cases.diagnoses.pathology_details.consistent_pathology_review |
| cases.diagnoses.pathology_details.created_datetime |
| cases.diagnoses.pathology_details.days_to_pathology_detail |
| cases.diagnoses.pathology_details.dysplasia_degree |
| cases.diagnoses.pathology_details.dysplasia_type |
| cases.diagnoses.pathology_details.epithelioid_cell_percent |
| cases.diagnoses.pathology_details.epithelioid_cell_percent_range |
| cases.diagnoses.pathology_details.extracapsular_extension |
| cases.diagnoses.pathology_details.extracapsular_extension_present |
| cases.diagnoses.pathology_details.extranodal_extension |
| cases.diagnoses.pathology_details.extraocular_nodule_size |
| cases.diagnoses.pathology_details.extrascleral_extension |
| cases.diagnoses.pathology_details.extrascleral_extension_present |
| cases.diagnoses.pathology_details.extrathyroid_extension |
| cases.diagnoses.pathology_details.greatest_tumor_dimension |
| cases.diagnoses.pathology_details.gross_tumor_weight |
| cases.diagnoses.pathology_details.histologic_progression_type |
| cases.diagnoses.pathology_details.intratubular_germ_cell_neoplasia_present |
| cases.diagnoses.pathology_details.largest_extrapelvic_peritoneal_focus |
| cases.diagnoses.pathology_details.lymph_node_dissection_method |
| cases.diagnoses.pathology_details.lymph_node_dissection_site |
| cases.diagnoses.pathology_details.lymph_node_involved_site |
| cases.diagnoses.pathology_details.lymph_node_involvement |
| cases.diagnoses.pathology_details.lymph_nodes_positive |
| cases.diagnoses.pathology_details.lymph_nodes_removed |
| cases.diagnoses.pathology_details.lymph_nodes_tested |
| cases.diagnoses.pathology_details.lymphatic_invasion_present |
| cases.diagnoses.pathology_details.margin_status |
| cases.diagnoses.pathology_details.measurement_type |
| cases.diagnoses.pathology_details.measurement_unit |
| cases.diagnoses.pathology_details.metaplasia_present |
| cases.diagnoses.pathology_details.micrometastasis_present |
| cases.diagnoses.pathology_details.morphologic_architectural_pattern |
| cases.diagnoses.pathology_details.necrosis_percent |
| cases.diagnoses.pathology_details.necrosis_present |
| cases.diagnoses.pathology_details.non_nodal_regional_disease |
| cases.diagnoses.pathology_details.non_nodal_tumor_deposits |
| cases.diagnoses.pathology_details.number_proliferating_cells |
| cases.diagnoses.pathology_details.pathology_detail_id |
| cases.diagnoses.pathology_details.percent_tumor_invasion |
| cases.diagnoses.pathology_details.percent_tumor_nuclei |
| cases.diagnoses.pathology_details.perineural_invasion_present |
| cases.diagnoses.pathology_details.peripancreatic_lymph_nodes_positive |
| cases.diagnoses.pathology_details.peripancreatic_lymph_nodes_tested |
| cases.diagnoses.pathology_details.prcc_type |
| cases.diagnoses.pathology_details.prostatic_chips_positive_count |
| cases.diagnoses.pathology_details.prostatic_chips_total_count |
| cases.diagnoses.pathology_details.prostatic_involvement_percent |
| cases.diagnoses.pathology_details.residual_tumor |
| cases.diagnoses.pathology_details.residual_tumor_measurement |
| cases.diagnoses.pathology_details.rhabdoid_percent |
| cases.diagnoses.pathology_details.rhabdoid_present |
| cases.diagnoses.pathology_details.sarcomatoid_percent |
| cases.diagnoses.pathology_details.sarcomatoid_present |
| cases.diagnoses.pathology_details.size_extraocular_nodule |
| cases.diagnoses.pathology_details.spindle_cell_percent |
| cases.diagnoses.pathology_details.spindle_cell_percent_range |
| cases.diagnoses.pathology_details.state |
| cases.diagnoses.pathology_details.submitter_id |
| cases.diagnoses.pathology_details.timepoint_category |
| cases.diagnoses.pathology_details.transglottic_extension |
| cases.diagnoses.pathology_details.tumor_basal_diameter |
| cases.diagnoses.pathology_details.tumor_burden |
| cases.diagnoses.pathology_details.tumor_depth_descriptor |
| cases.diagnoses.pathology_details.tumor_depth_measurement |
| cases.diagnoses.pathology_details.tumor_infiltrating_lymphocytes |
| cases.diagnoses.pathology_details.tumor_infiltrating_macrophages |
| cases.diagnoses.pathology_details.tumor_largest_dimension_diameter |
| cases.diagnoses.pathology_details.tumor_length_measurement |
| cases.diagnoses.pathology_details.tumor_level_prostate |
| cases.diagnoses.pathology_details.tumor_shape |
| cases.diagnoses.pathology_details.tumor_thickness |
| cases.diagnoses.pathology_details.tumor_width_measurement |
| cases.diagnoses.pathology_details.updated_datetime |
| cases.diagnoses.pathology_details.vascular_invasion_present |
| cases.diagnoses.pathology_details.vascular_invasion_type |
| cases.diagnoses.pathology_details.zone_of_origin_prostate |
| cases.diagnoses.treatments.chemo_concurrent_to_radiation |
| cases.diagnoses.treatments.clinical_trial_indicator |
| cases.diagnoses.treatments.course_number |
| cases.diagnoses.treatments.created_datetime |
| cases.diagnoses.treatments.days_to_treatment_end |
| cases.diagnoses.treatments.days_to_treatment_start |
| cases.diagnoses.treatments.drug_category |
| cases.diagnoses.treatments.embolic_agent |
| cases.diagnoses.treatments.initial_disease_status |
| cases.diagnoses.treatments.lesions_treated_number |
| cases.diagnoses.treatments.margin_distance |
| cases.diagnoses.treatments.margin_status |
| cases.diagnoses.treatments.margins_involved_site |
| cases.diagnoses.treatments.number_of_cycles |
| cases.diagnoses.treatments.number_of_fractions |
| cases.diagnoses.treatments.prescribed_dose |
| cases.diagnoses.treatments.prescribed_dose_units |
| cases.diagnoses.treatments.pretreatment |
| cases.diagnoses.treatments.protocol_identifier |
| cases.diagnoses.treatments.radiosensitizing_agent |
| cases.diagnoses.treatments.reason_treatment_ended |
| cases.diagnoses.treatments.reason_treatment_not_given |
| cases.diagnoses.treatments.regimen_or_line_of_therapy |
| cases.diagnoses.treatments.residual_disease |
| cases.diagnoses.treatments.route_of_administration |
| cases.diagnoses.treatments.state |
| cases.diagnoses.treatments.submitter_id |
| cases.diagnoses.treatments.therapeutic_agents |
| cases.diagnoses.treatments.therapeutic_level_achieved |
| cases.diagnoses.treatments.therapeutic_levels_achieved |
| cases.diagnoses.treatments.therapeutic_target_level |
| cases.diagnoses.treatments.timepoint_category |
| cases.diagnoses.treatments.treatment_anatomic_sites |
| cases.diagnoses.treatments.treatment_dose |
| cases.diagnoses.treatments.treatment_dose_max |
| cases.diagnoses.treatments.treatment_dose_units |
| cases.diagnoses.treatments.treatment_duration |
| cases.diagnoses.treatments.treatment_effect |
| cases.diagnoses.treatments.treatment_effect_indicator |
| cases.diagnoses.treatments.treatment_frequency |
| cases.diagnoses.treatments.treatment_id |
| cases.diagnoses.treatments.treatment_intent_type |
| cases.diagnoses.treatments.treatment_or_therapy |
| cases.diagnoses.treatments.treatment_outcome |
| cases.diagnoses.treatments.treatment_outcome_duration |
| cases.diagnoses.treatments.treatment_type |
| cases.diagnoses.treatments.updated_datetime |
| cases.exposures.age_at_last_exposure |
| cases.exposures.age_at_onset |
| cases.exposures.alcohol_days_per_week |
| cases.exposures.alcohol_drinks_per_day |
| cases.exposures.alcohol_frequency |
| cases.exposures.alcohol_history |
| cases.exposures.alcohol_intensity |
| cases.exposures.alcohol_type |
| cases.exposures.asbestos_exposure_type |
| cases.exposures.chemical_exposure_type |
| cases.exposures.cigarettes_per_day |
| cases.exposures.created_datetime |
| cases.exposures.environmental_tobacco_smoke_exposure |
| cases.exposures.exposure_duration |
| cases.exposures.exposure_duration_hrs_per_day |
| cases.exposures.exposure_duration_years |
| cases.exposures.exposure_id |
| cases.exposures.exposure_source |
| cases.exposures.exposure_type |
| cases.exposures.occupation_duration_years |
| cases.exposures.occupation_type |
| cases.exposures.pack_years_smoked |
| cases.exposures.parent_with_radiation_exposure |
| cases.exposures.secondhand_smoke_as_child |
| cases.exposures.smoking_frequency |
| cases.exposures.state |
| cases.exposures.submitter_id |
| cases.exposures.time_between_waking_and_first_smoke |
| cases.exposures.tobacco_smoking_onset_year |
| cases.exposures.tobacco_smoking_quit_year |
| cases.exposures.tobacco_smoking_status |
| cases.exposures.type_of_smoke_exposure |
| cases.exposures.type_of_tobacco_used |
| cases.exposures.updated_datetime |
| cases.exposures.use_per_day |
| cases.family_histories.created_datetime |
| cases.family_histories.family_history_id |
| cases.family_histories.relationship_age_at_diagnosis |
| cases.family_histories.relationship_primary_diagnosis |
| cases.family_histories.relationship_sex_at_birth |
| cases.family_histories.relationship_type |
| cases.family_histories.relative_deceased |
| cases.family_histories.relative_smoker |
| cases.family_histories.relative_with_cancer_history |
| cases.family_histories.relatives_with_cancer_history_count |
| cases.family_histories.state |
| cases.family_histories.submitter_id |
| cases.family_histories.updated_datetime |
| cases.follow_ups.adverse_event |
| cases.follow_ups.adverse_event_grade |
| cases.follow_ups.barretts_esophagus_goblet_cells_present |
| cases.follow_ups.cause_of_response |
| cases.follow_ups.created_datetime |
| cases.follow_ups.days_to_adverse_event |
| cases.follow_ups.days_to_first_event |
| cases.follow_ups.days_to_follow_up |
| cases.follow_ups.days_to_imaging |
| cases.follow_ups.days_to_progression |
| cases.follow_ups.days_to_progression_free |
| cases.follow_ups.days_to_recurrence |
| cases.follow_ups.discontiguous_lesion_count |
| cases.follow_ups.disease_response |
| cases.follow_ups.ecog_performance_status |
| cases.follow_ups.evidence_of_progression_type |
| cases.follow_ups.evidence_of_recurrence_type |
| cases.follow_ups.first_event |
| cases.follow_ups.follow_up_id |
| cases.follow_ups.histologic_progression |
| cases.follow_ups.history_of_tumor |
| cases.follow_ups.history_of_tumor_type |
| cases.follow_ups.hormone_replacement_therapy_type |
| cases.follow_ups.imaging_anatomic_site |
| cases.follow_ups.imaging_findings |
| cases.follow_ups.imaging_result |
| cases.follow_ups.imaging_suv |
| cases.follow_ups.imaging_suv_max |
| cases.follow_ups.imaging_type |
| cases.follow_ups.karnofsky_performance_status |
| cases.follow_ups.peritoneal_washing_results |
| cases.follow_ups.procedures_performed |
| cases.follow_ups.progression_or_recurrence |
| cases.follow_ups.progression_or_recurrence_anatomic_site |
| cases.follow_ups.progression_or_recurrence_type |
| cases.follow_ups.recist_targeted_regions_number |
| cases.follow_ups.recist_targeted_regions_sum |
| cases.follow_ups.scan_tracer_used |
| cases.follow_ups.state |
| cases.follow_ups.submitter_id |
| cases.follow_ups.timepoint_category |
| cases.follow_ups.treatment_emergent_adverse_event |
| cases.follow_ups.updated_datetime |
| cases.follow_ups.year_of_follow_up |
| cases.follow_ups.molecular_tests.aa_change |
| cases.follow_ups.molecular_tests.aneuploidy |
| cases.follow_ups.molecular_tests.antigen |
| cases.follow_ups.molecular_tests.biospecimen_type |
| cases.follow_ups.molecular_tests.biospecimen_volume |
| cases.follow_ups.molecular_tests.blood_test_normal_range_lower |
| cases.follow_ups.molecular_tests.blood_test_normal_range_upper |
| cases.follow_ups.molecular_tests.cell_count |
| cases.follow_ups.molecular_tests.chromosomal_translocation |
| cases.follow_ups.molecular_tests.chromosome |
| cases.follow_ups.molecular_tests.chromosome_arm |
| cases.follow_ups.molecular_tests.clonality |
| cases.follow_ups.molecular_tests.copy_number |
| cases.follow_ups.molecular_tests.created_datetime |
| cases.follow_ups.molecular_tests.cytoband |
| cases.follow_ups.molecular_tests.days_to_test |
| cases.follow_ups.molecular_tests.exon |
| cases.follow_ups.molecular_tests.gene_symbol |
| cases.follow_ups.molecular_tests.histone_family |
| cases.follow_ups.molecular_tests.histone_variant |
| cases.follow_ups.molecular_tests.hpv_strain |
| cases.follow_ups.molecular_tests.intron |
| cases.follow_ups.molecular_tests.laboratory_test |
| cases.follow_ups.molecular_tests.loci_abnormal_count |
| cases.follow_ups.molecular_tests.loci_count |
| cases.follow_ups.molecular_tests.locus |
| cases.follow_ups.molecular_tests.mismatch_repair_mutation |
| cases.follow_ups.molecular_tests.mitotic_count |
| cases.follow_ups.molecular_tests.mitotic_total_area |
| cases.follow_ups.molecular_tests.molecular_analysis_method |
| cases.follow_ups.molecular_tests.molecular_consequence |
| cases.follow_ups.molecular_tests.molecular_test_id |
| cases.follow_ups.molecular_tests.mutation_codon |
| cases.follow_ups.molecular_tests.pathogenicity |
| cases.follow_ups.molecular_tests.ploidy |
| cases.follow_ups.molecular_tests.second_exon |
| cases.follow_ups.molecular_tests.second_gene_symbol |
| cases.follow_ups.molecular_tests.specialized_molecular_test |
| cases.follow_ups.molecular_tests.staining_intensity_scale |
| cases.follow_ups.molecular_tests.staining_intensity_value |
| cases.follow_ups.molecular_tests.state |
| cases.follow_ups.molecular_tests.submitter_id |
| cases.follow_ups.molecular_tests.test_analyte_type |
| cases.follow_ups.molecular_tests.test_result |
| cases.follow_ups.molecular_tests.test_units |
| cases.follow_ups.molecular_tests.test_value |
| cases.follow_ups.molecular_tests.test_value_range |
| cases.follow_ups.molecular_tests.timepoint_category |
| cases.follow_ups.molecular_tests.transcript |
| cases.follow_ups.molecular_tests.updated_datetime |
| cases.follow_ups.molecular_tests.variant_origin |
| cases.follow_ups.molecular_tests.variant_type |
| cases.follow_ups.molecular_tests.zygosity |
| cases.follow_ups.other_clinical_attributes.aids_risk_factors |
| cases.follow_ups.other_clinical_attributes.bmi |
| cases.follow_ups.other_clinical_attributes.body_surface_area |
| cases.follow_ups.other_clinical_attributes.cd4_count |
| cases.follow_ups.other_clinical_attributes.cdc_hiv_risk_factors |
| cases.follow_ups.other_clinical_attributes.comorbidities |
| cases.follow_ups.other_clinical_attributes.comorbidity_method_of_diagnosis |
| cases.follow_ups.other_clinical_attributes.created_datetime |
| cases.follow_ups.other_clinical_attributes.days_to_comorbidity |
| cases.follow_ups.other_clinical_attributes.days_to_risk_factor |
| cases.follow_ups.other_clinical_attributes.diabetes_treatment_type |
| cases.follow_ups.other_clinical_attributes.dlco_ref_predictive_percent |
| cases.follow_ups.other_clinical_attributes.exercise_frequency_weekly |
| cases.follow_ups.other_clinical_attributes.eye_color |
| cases.follow_ups.other_clinical_attributes.fertility_history |
| cases.follow_ups.other_clinical_attributes.fev1_fvc_post_bronch_percent |
| cases.follow_ups.other_clinical_attributes.fev1_fvc_pre_bronch_percent |
| cases.follow_ups.other_clinical_attributes.fev1_ref_post_bronch_percent |
| cases.follow_ups.other_clinical_attributes.fev1_ref_pre_bronch_percent |
| cases.follow_ups.other_clinical_attributes.haart_treatment_indicator |
| cases.follow_ups.other_clinical_attributes.height |
| cases.follow_ups.other_clinical_attributes.hepatitis_sustained_virological_response |
| cases.follow_ups.other_clinical_attributes.hiv_viral_load |
| cases.follow_ups.other_clinical_attributes.hormonal_contraceptive_type |
| cases.follow_ups.other_clinical_attributes.hormonal_contraceptive_use |
| cases.follow_ups.other_clinical_attributes.hormonal_replacement_therapy_status |
| cases.follow_ups.other_clinical_attributes.hormone_replacement_therapy_type |
| cases.follow_ups.other_clinical_attributes.hysterectomy_margins_involved |
| cases.follow_ups.other_clinical_attributes.hysterectomy_type |
| cases.follow_ups.other_clinical_attributes.immunosuppressive_treatment_type |
| cases.follow_ups.other_clinical_attributes.menopause_status |
| cases.follow_ups.other_clinical_attributes.myasthenia_gravis_classification |
| cases.follow_ups.other_clinical_attributes.nadir_cd4_count |
| cases.follow_ups.other_clinical_attributes.nononcologic_therapeutic_agents |
| cases.follow_ups.other_clinical_attributes.number_of_pregnancies |
| cases.follow_ups.other_clinical_attributes.other_clinical_attribute_id |
| cases.follow_ups.other_clinical_attributes.oxygen_use_indicator |
| cases.follow_ups.other_clinical_attributes.oxygen_use_type |
| cases.follow_ups.other_clinical_attributes.pancreatitis_onset_year |
| cases.follow_ups.other_clinical_attributes.pregnancy_outcome |
| cases.follow_ups.other_clinical_attributes.pregnant_at_diagnosis |
| cases.follow_ups.other_clinical_attributes.premature_at_birth |
| cases.follow_ups.other_clinical_attributes.reflux_treatment_type |
| cases.follow_ups.other_clinical_attributes.risk_factor_method_of_diagnosis |
| cases.follow_ups.other_clinical_attributes.risk_factor_treatment |
| cases.follow_ups.other_clinical_attributes.risk_factors |
| cases.follow_ups.other_clinical_attributes.state |
| cases.follow_ups.other_clinical_attributes.submitter_id |
| cases.follow_ups.other_clinical_attributes.timepoint_category |
| cases.follow_ups.other_clinical_attributes.treatment_frequency |
| cases.follow_ups.other_clinical_attributes.undescended_testis_corrected |
| cases.follow_ups.other_clinical_attributes.undescended_testis_corrected_age |
| cases.follow_ups.other_clinical_attributes.undescended_testis_corrected_age_range |
| cases.follow_ups.other_clinical_attributes.undescended_testis_corrected_laterality |
| cases.follow_ups.other_clinical_attributes.undescended_testis_corrected_method |
| cases.follow_ups.other_clinical_attributes.undescended_testis_history |
| cases.follow_ups.other_clinical_attributes.undescended_testis_history_laterality |
| cases.follow_ups.other_clinical_attributes.updated_datetime |
| cases.follow_ups.other_clinical_attributes.viral_hepatitis_serology_tests |
| cases.follow_ups.other_clinical_attributes.weeks_gestation_at_birth |
| cases.follow_ups.other_clinical_attributes.weight |
| cases.project.dbgap_accession_number |
| cases.project.disease_type |
| cases.project.name |
| cases.project.primary_site |
| cases.project.project_id |
| cases.project.released |
| cases.project.state |
| cases.project.program.dbgap_accession_number |
| cases.project.program.name |
| cases.project.program.program_id |
| cases.samples.biospecimen_anatomic_site |
| cases.samples.biospecimen_laterality |
| cases.samples.catalog_reference |
| cases.samples.created_datetime |
| cases.samples.current_weight |
| cases.samples.days_to_collection |
| cases.samples.days_to_sample_procurement |
| cases.samples.diagnosis_pathologically_confirmed |
| cases.samples.distance_normal_to_tumor |
| cases.samples.distributor_reference |
| cases.samples.freezing_method |
| cases.samples.growth_rate |
| cases.samples.initial_weight |
| cases.samples.intermediate_dimension |
| cases.samples.longest_dimension |
| cases.samples.method_of_sample_procurement |
| cases.samples.passage_count |
| cases.samples.pathology_report_uuid |
| cases.samples.preservation_method |
| cases.samples.sample_id |
| cases.samples.sample_ordinal |
| cases.samples.sample_type |
| cases.samples.shortest_dimension |
| cases.samples.specimen_type |
| cases.samples.state |
| cases.samples.submitter_id |
| cases.samples.time_between_clamping_and_freezing |
| cases.samples.time_between_excision_and_freezing |
| cases.samples.tissue_collection_type |
| cases.samples.tissue_type |
| cases.samples.tumor_code_id |
| cases.samples.tumor_descriptor |
| cases.samples.updated_datetime |
| cases.samples.annotations.annotation_id |
| cases.samples.annotations.case_id |
| cases.samples.annotations.case_submitter_id |
| cases.samples.annotations.category |
| cases.samples.annotations.classification |
| cases.samples.annotations.created_datetime |
| cases.samples.annotations.creator |
| cases.samples.annotations.entity_id |
| cases.samples.annotations.entity_submitter_id |
| cases.samples.annotations.entity_type |
| cases.samples.annotations.legacy_created_datetime |
| cases.samples.annotations.legacy_updated_datetime |
| cases.samples.annotations.notes |
| cases.samples.annotations.state |
| cases.samples.annotations.status |
| cases.samples.annotations.submitter_id |
| cases.samples.annotations.updated_datetime |
| cases.samples.portions.created_datetime |
| cases.samples.portions.creation_datetime |
| cases.samples.portions.is_ffpe |
| cases.samples.portions.portion_id |
| cases.samples.portions.portion_number |
| cases.samples.portions.state |
| cases.samples.portions.submitter_id |
| cases.samples.portions.updated_datetime |
| cases.samples.portions.weight |
| cases.samples.portions.analytes.a260_a280_ratio |
| cases.samples.portions.analytes.amount |
| cases.samples.portions.analytes.analyte_id |
| cases.samples.portions.analytes.analyte_quantity |
| cases.samples.portions.analytes.analyte_type |
| cases.samples.portions.analytes.analyte_volume |
| cases.samples.portions.analytes.concentration |
| cases.samples.portions.analytes.created_datetime |
| cases.samples.portions.analytes.dna_integrity_number |
| cases.samples.portions.analytes.experimental_protocol_type |
| cases.samples.portions.analytes.normal_tumor_genotype_snp_match |
| cases.samples.portions.analytes.ribosomal_rna_28s_16s_ratio |
| cases.samples.portions.analytes.ribosomal_rna_28s_18s_ratio |
| cases.samples.portions.analytes.rna_integrity_number |
| cases.samples.portions.analytes.spectrophotometer_method |
| cases.samples.portions.analytes.state |
| cases.samples.portions.analytes.submitter_id |
| cases.samples.portions.analytes.updated_datetime |
| cases.samples.portions.analytes.well_number |
| cases.samples.portions.analytes.aliquots.aliquot_id |
| cases.samples.portions.analytes.aliquots.aliquot_quantity |
| cases.samples.portions.analytes.aliquots.aliquot_volume |
| cases.samples.portions.analytes.aliquots.amount |
| cases.samples.portions.analytes.aliquots.analyte_type |
| cases.samples.portions.analytes.aliquots.concentration |
| cases.samples.portions.analytes.aliquots.created_datetime |
| cases.samples.portions.analytes.aliquots.no_matched_normal_low_pass_wgs |
| cases.samples.portions.analytes.aliquots.no_matched_normal_targeted_sequencing |
| cases.samples.portions.analytes.aliquots.no_matched_normal_wgs |
| cases.samples.portions.analytes.aliquots.no_matched_normal_wxs |
| cases.samples.portions.analytes.aliquots.selected_normal_low_pass_wgs |
| cases.samples.portions.analytes.aliquots.selected_normal_targeted_sequencing |
| cases.samples.portions.analytes.aliquots.selected_normal_wgs |
| cases.samples.portions.analytes.aliquots.selected_normal_wxs |
| cases.samples.portions.analytes.aliquots.source_center |
| cases.samples.portions.analytes.aliquots.state |
| cases.samples.portions.analytes.aliquots.submitter_id |
| cases.samples.portions.analytes.aliquots.updated_datetime |
| cases.samples.portions.analytes.aliquots.annotations.annotation_id |
| cases.samples.portions.analytes.aliquots.annotations.case_id |
| cases.samples.portions.analytes.aliquots.annotations.case_submitter_id |
| cases.samples.portions.analytes.aliquots.annotations.category |
| cases.samples.portions.analytes.aliquots.annotations.classification |
| cases.samples.portions.analytes.aliquots.annotations.created_datetime |
| cases.samples.portions.analytes.aliquots.annotations.creator |
| cases.samples.portions.analytes.aliquots.annotations.entity_id |
| cases.samples.portions.analytes.aliquots.annotations.entity_submitter_id |
| cases.samples.portions.analytes.aliquots.annotations.entity_type |
| cases.samples.portions.analytes.aliquots.annotations.legacy_created_datetime |
| cases.samples.portions.analytes.aliquots.annotations.legacy_updated_datetime |
| cases.samples.portions.analytes.aliquots.annotations.notes |
| cases.samples.portions.analytes.aliquots.annotations.state |
| cases.samples.portions.analytes.aliquots.annotations.status |
| cases.samples.portions.analytes.aliquots.annotations.submitter_id |
| cases.samples.portions.analytes.aliquots.annotations.updated_datetime |
| cases.samples.portions.analytes.aliquots.center.center_id |
| cases.samples.portions.analytes.aliquots.center.center_type |
| cases.samples.portions.analytes.aliquots.center.code |
| cases.samples.portions.analytes.aliquots.center.name |
| cases.samples.portions.analytes.aliquots.center.namespace |
| cases.samples.portions.analytes.aliquots.center.short_name |
| cases.samples.portions.analytes.annotations.annotation_id |
| cases.samples.portions.analytes.annotations.case_id |
| cases.samples.portions.analytes.annotations.case_submitter_id |
| cases.samples.portions.analytes.annotations.category |
| cases.samples.portions.analytes.annotations.classification |
| cases.samples.portions.analytes.annotations.created_datetime |
| cases.samples.portions.analytes.annotations.creator |
| cases.samples.portions.analytes.annotations.entity_id |
| cases.samples.portions.analytes.annotations.entity_submitter_id |
| cases.samples.portions.analytes.annotations.entity_type |
| cases.samples.portions.analytes.annotations.legacy_created_datetime |
| cases.samples.portions.analytes.annotations.legacy_updated_datetime |
| cases.samples.portions.analytes.annotations.notes |
| cases.samples.portions.analytes.annotations.state |
| cases.samples.portions.analytes.annotations.status |
| cases.samples.portions.analytes.annotations.submitter_id |
| cases.samples.portions.analytes.annotations.updated_datetime |
| cases.samples.portions.annotations.annotation_id |
| cases.samples.portions.annotations.case_id |
| cases.samples.portions.annotations.case_submitter_id |
| cases.samples.portions.annotations.category |
| cases.samples.portions.annotations.classification |
| cases.samples.portions.annotations.created_datetime |
| cases.samples.portions.annotations.creator |
| cases.samples.portions.annotations.entity_id |
| cases.samples.portions.annotations.entity_submitter_id |
| cases.samples.portions.annotations.entity_type |
| cases.samples.portions.annotations.legacy_created_datetime |
| cases.samples.portions.annotations.legacy_updated_datetime |
| cases.samples.portions.annotations.notes |
| cases.samples.portions.annotations.state |
| cases.samples.portions.annotations.status |
| cases.samples.portions.annotations.submitter_id |
| cases.samples.portions.annotations.updated_datetime |
| cases.samples.portions.center.center_id |
| cases.samples.portions.center.center_type |
| cases.samples.portions.center.code |
| cases.samples.portions.center.name |
| cases.samples.portions.center.namespace |
| cases.samples.portions.center.short_name |
| cases.samples.portions.slides.bone_marrow_malignant_cells |
| cases.samples.portions.slides.created_datetime |
| cases.samples.portions.slides.number_proliferating_cells |
| cases.samples.portions.slides.percent_eosinophil_infiltration |
| cases.samples.portions.slides.percent_follicular_component |
| cases.samples.portions.slides.percent_granulocyte_infiltration |
| cases.samples.portions.slides.percent_inflam_infiltration |
| cases.samples.portions.slides.percent_lymphocyte_infiltration |
| cases.samples.portions.slides.percent_monocyte_infiltration |
| cases.samples.portions.slides.percent_necrosis |
| cases.samples.portions.slides.percent_neutrophil_infiltration |
| cases.samples.portions.slides.percent_normal_cells |
| cases.samples.portions.slides.percent_rhabdoid_features |
| cases.samples.portions.slides.percent_sarcomatoid_features |
| cases.samples.portions.slides.percent_stromal_cells |
| cases.samples.portions.slides.percent_tumor_cells |
| cases.samples.portions.slides.percent_tumor_nuclei |
| cases.samples.portions.slides.prostatic_chips_positive_count |
| cases.samples.portions.slides.prostatic_chips_total_count |
| cases.samples.portions.slides.prostatic_involvement_percent |
| cases.samples.portions.slides.section_location |
| cases.samples.portions.slides.slide_id |
| cases.samples.portions.slides.state |
| cases.samples.portions.slides.submitter_id |
| cases.samples.portions.slides.tissue_microarray_coordinates |
| cases.samples.portions.slides.updated_datetime |
| cases.samples.portions.slides.annotations.annotation_id |
| cases.samples.portions.slides.annotations.case_id |
| cases.samples.portions.slides.annotations.case_submitter_id |
| cases.samples.portions.slides.annotations.category |
| cases.samples.portions.slides.annotations.classification |
| cases.samples.portions.slides.annotations.created_datetime |
| cases.samples.portions.slides.annotations.creator |
| cases.samples.portions.slides.annotations.entity_id |
| cases.samples.portions.slides.annotations.entity_submitter_id |
| cases.samples.portions.slides.annotations.entity_type |
| cases.samples.portions.slides.annotations.legacy_created_datetime |
| cases.samples.portions.slides.annotations.legacy_updated_datetime |
| cases.samples.portions.slides.annotations.notes |
| cases.samples.portions.slides.annotations.state |
| cases.samples.portions.slides.annotations.status |
| cases.samples.portions.slides.annotations.submitter_id |
| cases.samples.portions.slides.annotations.updated_datetime |
| cases.summary.file_count |
| cases.summary.file_size |
| cases.summary.data_categories.data_category |
| cases.summary.data_categories.file_count |
| cases.summary.experimental_strategies.experimental_strategy |
| cases.summary.experimental_strategies.file_count |
| cases.tissue_source_site.bcr_id |
| cases.tissue_source_site.code |
| cases.tissue_source_site.name |
| cases.tissue_source_site.project |
| cases.tissue_source_site.tissue_source_site_id |
| center.center_id |
| center.center_type |
| center.code |
| center.name |
| center.namespace |
| center.short_name |
| downstream_analyses.analysis_id |
| downstream_analyses.analysis_type |
| downstream_analyses.created_datetime |
| downstream_analyses.state |
| downstream_analyses.submitter_id |
| downstream_analyses.updated_datetime |
| downstream_analyses.workflow_end_datetime |
| downstream_analyses.workflow_link |
| downstream_analyses.workflow_start_datetime |
| downstream_analyses.workflow_type |
| downstream_analyses.workflow_version |
| downstream_analyses.output_files.access |
| downstream_analyses.output_files.average_base_quality |
| downstream_analyses.output_files.average_insert_size |
| downstream_analyses.output_files.average_read_length |
| downstream_analyses.output_files.cancer_dna_fraction |
| downstream_analyses.output_files.channel |
| downstream_analyses.output_files.chip_id |
| downstream_analyses.output_files.chip_position |
| downstream_analyses.output_files.contamination |
| downstream_analyses.output_files.contamination_error |
| downstream_analyses.output_files.created_datetime |
| downstream_analyses.output_files.data_category |
| downstream_analyses.output_files.data_format |
| downstream_analyses.output_files.data_type |
| downstream_analyses.output_files.error_type |
| downstream_analyses.output_files.experimental_strategy |
| downstream_analyses.output_files.file_id |
| downstream_analyses.output_files.file_name |
| downstream_analyses.output_files.file_size |
| downstream_analyses.output_files.genome_doubling |
| downstream_analyses.output_files.imaging_date |
| downstream_analyses.output_files.magnification |
| downstream_analyses.output_files.md5sum |
| downstream_analyses.output_files.mean_coverage |
| downstream_analyses.output_files.msi_score |
| downstream_analyses.output_files.msi_status |
| downstream_analyses.output_files.pairs_on_diff_chr |
| downstream_analyses.output_files.plate_name |
| downstream_analyses.output_files.plate_well |
| downstream_analyses.output_files.platform |
| downstream_analyses.output_files.proportion_base_mismatch |
| downstream_analyses.output_files.proportion_coverage_10x |
| downstream_analyses.output_files.proportion_coverage_30x |
| downstream_analyses.output_files.proportion_reads_duplicated |
| downstream_analyses.output_files.proportion_reads_mapped |
| downstream_analyses.output_files.proportion_targets_no_coverage |
| downstream_analyses.output_files.read_pair_number |
| downstream_analyses.output_files.revision |
| downstream_analyses.output_files.stain_type |
| downstream_analyses.output_files.state |
| downstream_analyses.output_files.state_comment |
| downstream_analyses.output_files.subclonal_genome_fraction |
| downstream_analyses.output_files.submitter_id |
| downstream_analyses.output_files.tmb |
| downstream_analyses.output_files.tmb_exonic |
| downstream_analyses.output_files.tmb_nonsynonymous |
| downstream_analyses.output_files.tmb_nonsynonymous_exonic |
| downstream_analyses.output_files.total_reads |
| downstream_analyses.output_files.tumor_ploidy |
| downstream_analyses.output_files.tumor_purity |
| downstream_analyses.output_files.updated_datetime |
| downstream_analyses.output_files.wgs_coverage |
| index_files.access |
| index_files.average_base_quality |
| index_files.average_insert_size |
| index_files.average_read_length |
| index_files.cancer_dna_fraction |
| index_files.channel |
| index_files.chip_id |
| index_files.chip_position |
| index_files.contamination |
| index_files.contamination_error |
| index_files.created_datetime |
| index_files.data_category |
| index_files.data_format |
| index_files.data_type |
| index_files.error_type |
| index_files.experimental_strategy |
| index_files.file_id |
| index_files.file_name |
| index_files.file_size |
| index_files.genome_doubling |
| index_files.imaging_date |
| index_files.magnification |
| index_files.md5sum |
| index_files.mean_coverage |
| index_files.msi_score |
| index_files.msi_status |
| index_files.pairs_on_diff_chr |
| index_files.plate_name |
| index_files.plate_well |
| index_files.platform |
| index_files.proportion_base_mismatch |
| index_files.proportion_coverage_10x |
| index_files.proportion_coverage_30x |
| index_files.proportion_reads_duplicated |
| index_files.proportion_reads_mapped |
| index_files.proportion_targets_no_coverage |
| index_files.read_pair_number |
| index_files.revision |
| index_files.stain_type |
| index_files.state |
| index_files.state_comment |
| index_files.subclonal_genome_fraction |
| index_files.submitter_id |
| index_files.tmb |
| index_files.tmb_exonic |
| index_files.tmb_nonsynonymous |
| index_files.tmb_nonsynonymous_exonic |
| index_files.total_reads |
| index_files.tumor_ploidy |
| index_files.tumor_purity |
| index_files.updated_datetime |
| index_files.wgs_coverage |
| metadata_files.access |
| metadata_files.created_datetime |
| metadata_files.data_category |
| metadata_files.data_format |
| metadata_files.data_type |
| metadata_files.error_type |
| metadata_files.file_id |
| metadata_files.file_name |
| metadata_files.file_size |
| metadata_files.md5sum |
| metadata_files.state |
| metadata_files.state_comment |
| metadata_files.submitter_id |
| metadata_files.type |
| metadata_files.updated_datetime |
Annotation Fields
| Field Name |
|---|
| annotation_id |
| case_id |
| case_submitter_id |
| category |
| classification |
| created_datetime |
| entity_id |
| entity_submitter_id |
| entity_type |
| legacy_created_datetime |
| legacy_updated_datetime |
| notes |
| state |
| status |
| submitter_id |
| updated_datetime |
| project.code |
| project.dbgap_accession_number |
| project.disease_type |
| project.name |
| project.primary_site |
| project.project_id |
| project.released |
| project.state |
| project.program.dbgap_accession_number |
| project.program.name |
| project.program.program_id |
Field Group Listing by Endpoint
Projects Field Groups
| Field Group Name |
|---|
| program |
| summary |
| summary.data_categories |
| summary.experimental_strategies |
Cases Field Groups
| Field Group Name |
|---|
| annotations |
| demographic |
| diagnoses |
| diagnoses.annotations |
| diagnoses.pathology_details |
| diagnoses.treatments |
| exposures |
| family_histories |
| files |
| files.analysis |
| files.analysis.input_files |
| files.analysis.metadata |
| files.analysis.metadata.read_groups |
| files.analysis.metadata.read_groups.read_group_qcs |
| files.archive |
| files.center |
| files.downstream_analyses |
| files.downstream_analyses.output_files |
| files.index_files |
| files.metadata_files |
| follow_ups |
| follow_ups.molecular_tests |
| follow_ups.other_clinical_attributes |
| project |
| project.program |
| samples |
| samples.annotations |
| samples.portions |
| samples.portions.analytes |
| samples.portions.analytes.aliquots |
| samples.portions.analytes.aliquots.annotations |
| samples.portions.analytes.aliquots.center |
| samples.portions.analytes.annotations |
| samples.portions.annotations |
| samples.portions.center |
| samples.portions.slides |
| samples.portions.slides.annotations |
| summary |
| summary.data_categories |
| summary.experimental_strategies |
| tissue_source_site |
Files Field Groups
| Field Group Name |
|---|
| analysis |
| analysis.input_files |
| analysis.metadata |
| analysis.metadata.read_groups |
| analysis.metadata.read_groups.read_group_qcs |
| annotations |
| archive |
| associated_entities |
| cases |
| cases.annotations |
| cases.demographic |
| cases.diagnoses |
| cases.diagnoses.annotations |
| cases.diagnoses.pathology_details |
| cases.diagnoses.treatments |
| cases.exposures |
| cases.family_histories |
| cases.follow_ups |
| cases.follow_ups.molecular_tests |
| cases.follow_ups.other_clinical_attributes |
| cases.project |
| cases.project.program |
| cases.samples |
| cases.samples.annotations |
| cases.samples.portions |
| cases.samples.portions.analytes |
| cases.samples.portions.analytes.aliquots |
| cases.samples.portions.analytes.aliquots.annotations |
| cases.samples.portions.analytes.aliquots.center |
| cases.samples.portions.analytes.annotations |
| cases.samples.portions.annotations |
| cases.samples.portions.center |
| cases.samples.portions.slides |
| cases.samples.portions.slides.annotations |
| cases.summary |
| cases.summary.data_categories |
| cases.summary.experimental_strategies |
| cases.tissue_source_site |
| center |
| downstream_analyses |
| downstream_analyses.output_files |
| index_files |
| metadata_files |
Annotations Field Groups
| Field Group Name |
|---|
| project |
| project.program |
GDC Conventions Supplemental
| Field Group Name | |
|---|---|
| File size | Listed in bytes |
| Submitter id | String supplied by submitter |
| Datetime | Combination of date and time of day in the form [-]CCYY-MM-DDThh:mm:ss |
| Id | GDC supplied UUID ID |