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ABSOLUTE LiftOver

Description

ABSOLUTE LiftOver is a copy number variation (CNV) pipeline used in GDC genotyping array harmonization.

Overview

The ABSOLUTE LiftOver workflow in the GDC is a copy number variation (CNV) pipeline used for genotyping array harmonization. It converts genomic coordinates from hg19 to GRCh38, ensuring high-quality, curated CNV data for downstream analysis. This pipeline also provides gene-level copy numbers, along with purity and ploidy measurements.

Input

  • Tumor CEL - Genotyping Array

Output

  • TSV (Data Type: Gene Level Copy Number)

References

  1. Copy Number Variation Analysis Pipeline
  2. ABSOLUTE Copy Number

Categories: Workflow Type