ASCAT2

Description

ASCAT2 is a copy number variation (CNV) analysis pipeline used in GDC genotyping array harmonization.

Overview

ASCAT2 is used to analyze CNVs in tumor and normal samples from genotyping arrays. It processes the raw array files to generate segmented CNV data.

Input

• Tumor CEL - Genotyping Array
• Normal CEL - Genotyping Array

Output

• TXT (Data Type: Gene Level Copy Number and Allele-specific Copy Number Segment)

References

1. Copy Number Variation Analysis Pipeline
2. ASCAT Pipelines

External Links

• Example ASCAT analysis
• GDC Data Portal

Categories: Workflow Type