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ASCAT3

Description

ASCAT3 is an advanced copy number variation (CNV) analysis pipeline used in GDC genotyping array harmonization.

Overview

ASCAT3 improves upon previous versions to provide more accurate CNV detection in tumor and normal samples from genotyping arrays. It processes the raw array files to generate high-resolution segmented CNV data.

Input

  • Tumor CEL - Genotyping Array
  • Normal CEL - Genotyping Array

Output

  • TXT (Data Type: Allele-specific Copy Number Segment)
  • TSV (Data Type: Gene Level Copy Number)

References

  1. Copy Number Variation Analysis Pipeline
  2. ASCAT Pipelines

Categories: Workflow Type