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Arriba

Description

The Arriba workflow is part of the GDC mRNA quantification analysis pipeline used for detecting gene fusions in RNA-Seq data.

Overview

Arriba is one of the two pipelines the GDC uses to detect gene fusions. The Arriba gene fusion pipeline detects gene fusions from the RNA-Seq data of tumor samples.

Input

  • Tumor BAM - RNA-Seq
  • Normal BAM - RNA-Seq

Output

  • TSV (Data Type: Transcript Fusion)
  • BEDPE (Data Type: Transcript Fusion)

References

  1. Arriba Fusion Pipeline
  2. mRNA Analysis Pipeline

Categories: Workflow Type