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AscatNGS

Description

ASCATNGS is a copy number variation (CNV) analysis pipeline tailored for next-generation sequencing (NGS) data used in GDC whole genome sequencing (WGS) harmonization.

Overview

ASCATNGS is specifically designed to detect CNVs in tumor and normal samples from NGS data. It processes aligned BAM files to generate segmented CNV data, providing high-resolution insights into genomic alterations.

Input

  • Tumor BAM - WGS
  • Normal BAM - WGS

Output

  • TSV (Data Type: Gene Level Copy Number)
  • TXT (Data Type: Copy Number Segment)

References

  1. Copy Number Variation Analysis Pipeline
  2. ASCAT Pipelines
  3. Whole Genome Sequencing Variant Calling

Categories: Workflow Type