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BWA with BQSR

Description

BWA with BQSR (Base Quality Score Recalibration) is a sequencing alignment and quality improvement workflow used in the GDC targeted sequencing data harmonization.

Overview

BWA with BQSR is a BWA based alignment workflow for targeted sequencing with additional step of Base Quality Score Recalibration (BQSR). BWA with BQSR is used for aligning sequence reads to a reference genome.

Input

  • Submitted sequencing reads

Output

  • BAM (Data Type: Aligned Reads)

References

  1. DNA-Seq Analysis Pipeline
  2. Alignment Workflow

Categories: Workflow Type