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CellRanger - 10x Filtered Counts

Description

CellRanger - 10x Filtered Counts is a gene expression pipeline used in GDC single-cell RNA-Seq (scRNA-Seq) harmonization.

Overview

CellRanger - 10x Filtered Counts is part of the scRNA-Seq Pipeline used for scRNA-Seq harmonization at GDC. Gene expression quantification, for detected cellular barcodes only, is performed with CellRanger and generates transcriptome profiling data.

Input

  • BAM - scRNA-Seq

Output

  • MEX (Data Type: Gene Expression Quantification)

References

  1. mRNA Analysis Pipeline
  2. scRNA Gene Expression Pipeline

Categories: Workflow Type