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FM Simple Somatic Mutation

Description

The FM (Foundation Medicine) Simple Somatic Mutation (SSM) workflow is a genomic profile harmonization workflow in the GDC for identifying simple somatic mutations in targeted sequencing data.

Overview

FM Simple Somatic Mutation is the pipeline used for genomic profile harmonization for the FM-AD project at the GDC. Genomic profile harmonization is performed by lifting over simple nucleotide variation data from uploaded genomic profile data.

Input

  • Submitted genomic profiles

Output

  • VCF (Data Type: Raw Simple Somatic Mutation)

References

  1. DNA-Seq Analysis Pipeline

Categories: Workflow Type