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FoundationOne Variant Aggregation and Masking

Description

FoundationOne Variant Aggregation and Masking is a somatic mutation aggregation workflow used in GDC targeted sequencing harmonization.

Overview

FoundationOne Variant Aggregation and Masking is a pipeline used for targeted sequencing somatic mutation aggregation at the GDC. Somatic mutation aggregation is performed by aggregating annotated somatic mutations from the FM-AD project in the GDC by case primary site.

Input

  • Tumor VCF - Targeted Sequencing

Output

  • MAF (Data Type: Aggregated Somatic Mutation)

Categories: Workflow Type