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GATK4 MuTect2 Tumor-Only Annotation

Description

GATK4 MuTect2 Tumor-Only Annotation is a workflow used in GDC whole exome sequencing (WXS) and targeted sequencing harmonization.

Overview

GATK4 MuTect2 Tumor-Only Annotation is a workflow utilized in the GDC for annotating somatic variants identified in tumor-only whole exome sequencing (WXS) and targeted sequencing data.

Input

  • Tumor VCF - WXS or Targeted Sequencing

Output

  • VCF (Data Type: Annotated Somatic Mutation)
  • MAF (Data Type: Annotated Somatic Mutation)

References

  1. DNA-Seq Analysis Pipeline
  2. Tumor-Only Variant Annotation Workflow

Categories: Workflow Type