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STAR-Fusion

Description

STAR-Fusion is a structural variant calling pipeline used in GDC RNA-Seq harmonization.

Overview

STAR-Fusion is a pipeline used for RNA-Seq structural variant calling at the GDC. Structural variant calling is performed with STAR-Fusion using tumor or normal alignments and generates structural variation data.

Input

  • BAM - RNA-Seq

Output

  • BEDPE (Data Type: Transcript Fusion)
  • TSV (Data Type: Transcript Fusion)

STAR Pipeline Diagram

References

  1. mRNA Analysis Pipeline
  2. STAR-Fusion Pipeline

Categories: Workflow Type