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STAR 2-Pass Transcriptome

Description

STAR 2-Pass Transcriptome is an alignment pipeline used in GDC RNA-Seq harmonization.

Overview

STAR 2-Pass Transcriptome is a pipeline used for RNA-Seq reads alignment at the GDC. Alignment is performed with STAR and generates sequencing reads data.

Input

  • Submitted sequencing reads

Output

  • BAM (Data Type: Aligned Reads)

STAR Pipeline Diagram

References

  1. mRNA Analysis Pipeline
  2. RNA-Seq Alignment Workflow
  3. RNA-Seq Alignment Command Line Parameters

Categories: Workflow Type