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STAR - Counts

Description

STAR - Counts is an RNA expression pipeline used in GDC RNA-Seq harmonization.

Overview

STAR - Counts is a pipeline used for to quantify gene expression from RNA-Seq data. Quantification is performed with STAR using tumor or normal alignments and generates transcriptome profiling data.

Input

  • Genomic BAM - RNA-Seq

Output

  • TSV (Data Type: Gene Expression Quantification, Splice Junction Quantification)

STAR Pipeline Diagram

References

  1. mRNA Analysis Pipeline
  2. mRNA Expression Workflow
  3. mRNA Quantification Command Line Parameters

Categories: Workflow Type