BWA-aln

Description

BWA-aln is an alignment workflow used in GDC miRNA-Seq data harmonization. BWA is an alignment algorithm that is used to align read groups to the reference genome.

Overview

See the Reference links below.

Input

• Submitted sequencing reads

Output

• BAM (Data Type: Aligned Reads)

References

1. DNA-Seq Analysis Pipeline
2. Alignment Workflow

External Links

• Overview of GDC Harmonization Workflows
• BWA on GitHub
• BWA algorithms
• Li, Heng, and Richard Durbin. "Fast and accurate short read alignment with Burrows-Wheeler transform." Bioinformatics 25, no. 14 (2009): 1754-1760.
• GDC Data Portal

Categories: Workflow Type