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CellRanger - 10x Chromium

Description

CellRanger - 10x Chromium is a gene expression pipeline used in GDC single-cell RNA-Seq (scRNA-Seq) harmonization.

Overview

CellRanger - 10x Chromium is part of the scRNA-Seq Pipeline (single-nuclei) used for scRNA-Seq harmonization at GDC. Alignment is performed with CellRanger - 10x Chromium using tumor tissues and generates sequencing reads data.

Input

  • Submitted sequencing reads

Output

  • BAM (Data Type: Aligned Reads)

References

  1. mRNA Analysis Pipeline
  2. scRNA Gene Expression Pipeline

Categories: Workflow Type