DNAcopy
Description
DNAcopy is a copy number variation (CNV) analysis pipeline used in GDC genotyping array harmonization.
Overview
DNAcopy is one of the three copy number variation analysis pipelines at the GDC. CNV analysis is performed with DNAcopy using Affymetrix SNP 6.0 data and generates copy number variation data.
Input
- Submitted tangent copy number files
Output
- TXT (Data Type: Copy Number Segment, Masked Copy Number Segment)
References
External Links
- Birdsuite
- Olshen, Adam B., E. S. Venkatraman, Robert Lucito, and Michael Wigler. "Circular binary segmentation for the analysis of array-based DNA copy number data." Biostatistics 5, no. 4 (2004): 557-572.
- GDC Data Portal
Categories: Workflow Type