Skip to content

Seurat - 10x Chromium

Description

Seurat - 10x Chromium is a secondary gene expression pipeline used in GDC single-cell RNA-Seq (scRNA-Seq) harmonization.

Overview

Seurat - 10x Chromium is a pipeline used for scRNA-Seq for secondary gene expression analysis at the GDC. Secondary gene expression analysis is performed with Seurat using gene expression data and generates transcriptome profiling data.

Input

  • MEX (Filtered Counts) - scRNA-Seq

Output

  • HDF5 (Data Type: Single Cell Analysis)
  • TSV (Data Type: Differential Gene Expression, Single Cell Analysis)

References

  1. mRNA Analysis Pipeline
  2. scRNA-Seq Pipeline (single-nuclei)
  3. scRNA Analysis Pipeline

Categories: Workflow Type