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VarScan2 Annotation

Description

VarScan2 Annotation is a somatic mutation annotation pipeline in GDC whole exome sequencing (WXS) and targeted sequencing harmonization.

Overview

VarScan2 Annotation is a workflow in the GDC that annotates somatic variants identified by the VarScan2 variant calling pipeline.

Input

  • VCF (Data Type: Raw Simple Somatic Mutation)

Output

  • MAF (Data Type: Annotated Somatic Mutation)
  • VCF (Data Type: Annotated Somatic Mutation)

References

  1. DNA-Seq Analysis Pipeline
  2. Variant Call Annotation Workflow

Categories: Workflow Type